Evidence map›Paper›PMID 30272004›Full record

ArticleCommunications biology2018

In situ serial crystallography for rapid de novo membrane protein structure determination.

Chia-Ying Huang, Vincent Olieric, Nicole Howe, Rangana Warshamanage, Tobias Weinert, Ezequiel Panepucci, Lutz Vogeley, Shibom Basu, Kay Diederichs, Martin Caffrey and 1 more

Abstract read
In one paragraph

Article in Communications biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Review
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  4. Article
  5. Article
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  9. Article
  10. Versatile microporous polymer-based supports for serial macromolecular crystallography.Acta crystallographica. Section D, Structural biology · 2021
    Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Low-doseIUCrJ · 2020
    Article
  16. Article
  17. Article
  18. 3D-printed holders forJournal of applied crystallography · 2020
    Article
  19. Journal of applied crystallography · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Chia-Ying HuangSwiss Light Source, Paul Scherrer Institute, CH-5232, Villigen, Switzerland.
Vincent OliericSwiss Light Source, Paul Scherrer Institute, CH-5232, Villigen, Switzerland.ORCID http://orcid.org/0000-0002-0533-7222
Nicole HoweMembrane Structural and Functional Biology (MS&FB) Group, School of Medicine and School of Biochemistry and Immunology, Trinity College Dublin, Dublin 2, D02 R590, Ireland.
Rangana WarshamanageSwiss Light Source, Paul Scherrer Institute, CH-5232, Villigen, Switzerland.
Tobias WeinertSwiss Light Source, Paul Scherrer Institute, CH-5232, Villigen, Switzerland.
Ezequiel PanepucciSwiss Light Source, Paul Scherrer Institute, CH-5232, Villigen, Switzerland.ORCID http://orcid.org/0000-0003-3388-997X
Lutz VogeleyMembrane Structural and Functional Biology (MS&FB) Group, School of Medicine and School of Biochemistry and Immunology, Trinity College Dublin, Dublin 2, D02 R590, Ireland.
Shibom BasuSwiss Light Source, Paul Scherrer Institute, CH-5232, Villigen, Switzerland.
Kay DiederichsFachbereich Biologie, Universität Konstanz, M647, D-78457, Konstanz, Germany.
Martin CaffreyMembrane Structural and Functional Biology (MS&FB) Group, School of Medicine and School of Biochemistry and Immunology, Trinity College Dublin, Dublin 2, D02 R590, Ireland. martin.caffrey@tcd.ie.
Meitian WangSwiss Light Source, Paul Scherrer Institute, CH-5232, Villigen, Switzerland. meitian.wang@psi.ch.ORCID http://orcid.org/0000-0002-5340-3036

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

De novo membrane protein structure determination is often limited by the availability of large crystals and the difficulties in obtaining accurate diffraction data for experimental phasing. Here we present a method that combines in situ serial crystallography with de novo phasing for fast, efficient membrane protein structure determination. The method enables systematic diffraction screening and rapid data collection from hundreds of microcrystals in in meso crystallization wells without the need for direct crystal harvesting. The requisite data quality for experimental phasing is achieved by accumulating diffraction signals from isomorphous crystals identified post-data collection. The method works in all experimental phasing scenarios and is particularly attractive with fragile, weakly diffracting microcrystals. The automated serial data collection approach can be readily adopted at most microfocus macromolecular crystallography beamlines.

Identifiers

PMID30272004
PMCPMC6123769

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.