Evidence map›Paper›PMID 30270107›Full record

ArticleMolecular cell2018

Comprehensive Mapping of Histone Modifications at DNA Double-Strand Breaks Deciphers Repair Pathway Chromatin Signatures.

Thomas Clouaire, Vincent Rocher, Anahita Lashgari, Coline Arnould, Marion Aguirrebengoa, Anna Biernacka, Magdalena Skrzypczak, François Aymard, Bernard Fongang, Norbert Dojer and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 187 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
187citing papers in PubMed, 1 pooled it
11.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

187 citing papers in PubMed, 1 synthesis or guideline pooled it, 316 citations in OpenAlex.

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127 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 4 countries.

Thomas ClouaireLBCMCP, Centre de Biologie Integrative (CBI), CNRS, Université de Toulouse, UT3, Toulouse 31062, France. Electronic address: thomas.clouaire@univ-tlse3.fr.
Vincent RocherLBCMCP, Centre de Biologie Integrative (CBI), CNRS, Université de Toulouse, UT3, Toulouse 31062, France.
Anahita LashgariSt-Patrick Research Group in Basic Oncology, Laval University Cancer Research Center, Oncology Axis-CHU de Québec-Université Laval Research Center, Quebec City, QC G1R 3S3, Canada.
Coline ArnouldLBCMCP, Centre de Biologie Integrative (CBI), CNRS, Université de Toulouse, UT3, Toulouse 31062, France.
Marion AguirrebengoaLBCMCP, Centre de Biologie Integrative (CBI), CNRS, Université de Toulouse, UT3, Toulouse 31062, France.
Anna BiernackaLaboratory of Bioinformatics and Systems Biology, Centre of New Technologies, University of Warsaw, Zwirki i Wigury Warsaw 93, 02-089, Poland.
Magdalena SkrzypczakLaboratory of Bioinformatics and Systems Biology, Centre of New Technologies, University of Warsaw, Zwirki i Wigury Warsaw 93, 02-089, Poland.
François AymardLBCMCP, Centre de Biologie Integrative (CBI), CNRS, Université de Toulouse, UT3, Toulouse 31062, France.
Bernard FongangDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555-0615, USA.
Norbert DojerDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555-0615, USA; Institute of Informatics, University of Warsaw, Banacha 2, 02-097 Warsaw, Poland.
Jason S IacovoniBioinformatic Plateau I2MC, INSERM and University of Toulouse, Toulouse 31062, France.
Maga RowickaDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555-0615, USA.
Krzysztof GinalskiLaboratory of Bioinformatics and Systems Biology, Centre of New Technologies, University of Warsaw, Zwirki i Wigury Warsaw 93, 02-089, Poland.
Jacques CôtéSt-Patrick Research Group in Basic Oncology, Laval University Cancer Research Center, Oncology Axis-CHU de Québec-Université Laval Research Center, Quebec City, QC G1R 3S3, Canada.
Gaëlle LegubeLBCMCP, Centre de Biologie Integrative (CBI), CNRS, Université de Toulouse, UT3, Toulouse 31062, France. Electronic address: gaelle.legube@univ-tlse3.fr.
University of Warsaw · PLLaboratoire de Biologie Cellulaire et Moléculaire du Contrôle de la Prolifération · FRCentre National de la Recherche Scientifique · FRThe University of Texas Medical Branch at Galveston · USUniversité Laval · CAInserm · FRUniversité de Toulouse · FR

Funding

Decoding Genome Instability by Combining Accurate Mapping and Predictive ModelingR01GM112131 · NIGMS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI ROWICKA, MAGA MALGORZATA · 2014 to 2023
$3.2M
Investigating DNA repair vulnerabilities in oncometabolite producing cancersF31CA260794 · NCI · YALE UNIVERSITY · PI NORONHA, KATELYN · 2021 to 2023
$122k
CIHR FND-143314NCI NIH HHS F31 CA260794NIGMS NIH HHS R01 GM112131
6 · The paper itself

Abstract

Double-strand breaks (DSBs) are extremely detrimental DNA lesions that can lead to cancer-driving mutations and translocations. Non-homologous end joining (NHEJ) and homologous recombination (HR) represent the two main repair pathways operating in the context of chromatin to ensure genome stability. Despite extensive efforts, our knowledge of DSB-induced chromatin still remains fragmented. Here, we describe the distribution of 20 chromatin features at multiple DSBs spread throughout the human genome using ChIP-seq. We provide the most comprehensive picture of the chromatin landscape set up at DSBs and identify NHEJ- and HR-specific chromatin events. This study revealed the existence of a DSB-induced monoubiquitination-to-acetylation switch on histone H2B lysine 120, likely mediated by the SAGA complex, as well as higher-order signaling at HR-repaired DSBs whereby histone H1 is evicted while ubiquitin and 53BP1 accumulate over the entire γH2AX domains.

Indexed as

Cell Line, TumorChromatinDNA Breaks, Double-StrandedDNA RepairGenomic InstabilityHistonesHomologous RecombinationHumansK562 CellsTumor Suppressor p53-Binding Protein 1ChromatinHistonesTumor Suppressor p53-Binding Protein 153BP1ChIP-seqchromatinDNA double-strand breaksDSB repairhistone H1histone modificationshomologous recombinationnon-homologous end joiningγH2AX

Identifiers

PMID30270107
PMCPMC6202423
OpenAlexW2892569542

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.