Evidence map›Paper›PMID 30268539›Full record

ArticleBiophysical journal2018

Simulations Reveal Multiple Intermediates in the Unzipping Mechanism of Neuronal SNARE Complex.

Giovanni Pinamonti, Gregory Campo, Justin Chen, Alex Kluber, Cecilia Clementi

Abstract read
In one paragraph

Article in Biophysical journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Giovanni PinamontiDepartment for Mathematics and Computer Science, Freie Universität, Berlin, Germany.
Gregory CampoCenter for Theoretical Biological Physics and Department of Chemistry, Rice University, Houston, Texas.
Justin ChenDepartment of Physics and Astronomy, Rice University, Houston, Texas.
Alex KluberCenter for Theoretical Biological Physics and Department of Chemistry, Rice University, Houston, Texas.
Cecilia ClementiDepartment for Mathematics and Computer Science, Freie Universität, Berlin, Germany; Center for Theoretical Biological Physics and Department of Chemistry, Rice University, Houston, Texas. Electronic address: cecilia@rice.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The assembling of the soluble N-ethylmaleimide-sensitive factor attachment protein receptor protein complex is a fundamental step in neuronal exocytosis, and it has been extensively studied in the last two decades. Yet, many details of this process remain inaccessible with the current experimental space and time resolution. Here, we study the zipping mechanism of the soluble N-ethylmaleimide-sensitive factor attachment protein receptor complex computationally by using a coarse-grained model. We explore the different pathways available and analyze their dependence on the computational model employed. We reveal and characterize multiple intermediate states, in agreement with previous experimental findings. We use our model to analyze the influence of single-residue mutations on the thermodynamics of the folding process.

Indexed as

Computer SimulationExocytosisProtein FoldingCell MembraneEnergy MetabolismHumansMutationNeuronsSNARE ProteinsThermodynamicsSNARE Proteins

Identifiers

PMID30268539
PMCPMC6260205

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.