Evidence map›Paper›PMID 30268337›Full record

ReviewPlacenta2019

Genome-wide identification of enhancer elements in the placenta.

Majd Abdulghani, Ashish Jain, Geetu Tuteja

Abstract readReview
In one paragraph

Review in Placenta, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Majd AbdulghaniDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011-1079, USA; Interdepartmental Genetics and Genomics, Iowa State University, Ames, IA, 50011-1079, USA.
Ashish JainDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011-1079, USA; Bioinformatics and Computational Biology, Iowa State University, Ames, IA, 50011-1079, USA.
Geetu TutejaDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011-1079, USA; Interdepartmental Genetics and Genomics, Iowa State University, Ames, IA, 50011-1079, USA; Bioinformatics and Computational Biology, Iowa State University, Ames, IA, 50011-1079, USA. Electronic address: geetu@iastate.edu.
Iowa State University · US

Funding

The role of HIF regulated genes and genomic regions in trophoblast invasionR00HD079545 · NICHD · IOWA STATE UNIVERSITY · PI TUTEJA, GEETU · 2015 to 2017
$745k
Placenta Association of the Americas Conference GrantR13HD084096 · NICHD · UNIVERSITY OF COLORADO DENVER · PI JANSSON, THOMAS · 2015 to 2024
$74k
NICHD NIH HHS R00 HD079545NICHD NIH HHS R13 HD084096
6 · The paper itself

Abstract

Normal placental development is essential for a healthy pregnancy, and is contingent upon tight spatiotemporal regulation of gene expression. One level of transcriptional control is via enhancer elements in the genome. Enhancers are distal cis-regulatory elements that can impact gene expression regardless of their position or orientation. The study of enhancers in the placenta is usually focused on one or two at a time, and the simultaneous identification of all enhancers has been limited. However, such a holistic approach is necessary if we are to gain a systems-level understanding of gene expression regulation in the placenta. Here, we review current methods for genome-scale enhancer identification, as well as studies that have applied those techniques in the placenta, with the aim of guiding future research.

Indexed as

Enhancer Elements, GeneticGenome, HumanPlacentationAnimalsFemaleHumansPlacentaPregnancyATAC-seqChIP-seqcis-regulationDNase-seqEnhancer elementsFAIRE-seq

Identifiers

PMID30268337
PMCPMC6420402
OpenAlexW2892148324

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.