Evidence map›Paper›PMID 30266991›Full record

ArticleNature communications2018

Genus-wide sequencing supports a two-locus model for sex-determination in Phoenix.

Maria F Torres, Lisa S Mathew, Ikhlak Ahmed, Iman K Al-Azwani, Robert Krueger, Diego Rivera-Nuñez, Yasmin A Mohamoud, Andrew G Clark, Karsten Suhre, Joel A Malek

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 61 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 1 pooled it
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 1 synthesis or guideline pooled it, 133 citations in OpenAlex.

  1. Pooled it
  2. Article
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  7. Article
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  11. The genomic and epigenomic landscapes of hemizygous genes across crops with contrasting reproductive systems.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Article
  13. Article
  14. Cytochromes P450 evolution in the plant terrestrialization context.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  15. Sexy ways: approaches to studying plant sex chromosomes.Journal of experimental botany · 2024
    Review
  16. Article
  17. Article
  18. Parsimony and Poeciliid Sex Chromosome Evolution.Genome biology and evolution · 2023
    Article
  19. Article
  20. Genes · 2023
    Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Maria F TorresDepartment of Genetic Medicine, Weill Cornell Medicine-Qatar, PO Box 24144, Doha, Qatar.
Lisa S MathewGenomics Laboratory, Weill Cornell Medicine-Qatar, PO Box 24144, Doha, Qatar.
Ikhlak AhmedDepartment of Genetic Medicine, Weill Cornell Medicine-Qatar, PO Box 24144, Doha, Qatar.
Iman K Al-AzwaniGenomics Laboratory, Weill Cornell Medicine-Qatar, PO Box 24144, Doha, Qatar.
Robert KruegerUSDA-ARS National Clonal Germplasm Repository for Citrus & Dates, Riverside, 92507, CA, USA.
Diego Rivera-NuñezDepartment of Plant Biology, Faculty of Biology, University of Murcia, Murcia, 30100, Spain.
Yasmin A MohamoudGenomics Laboratory, Weill Cornell Medicine-Qatar, PO Box 24144, Doha, Qatar.
Andrew G ClarkDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, 14853, NY, USA.
Karsten SuhreDepartment of Physiology and Biophysics, Weill Cornell Medicine-Qatar, PO Box 24144, Doha, Qatar.ORCID http://orcid.org/0000-0001-9638-3912
Joel A MalekDepartment of Genetic Medicine, Weill Cornell Medicine-Qatar, PO Box 24144, Doha, Qatar. jom2042@qatar-med.cornell.edu.ORCID http://orcid.org/0000-0002-1516-8477
Weill Cornell Medical College in Qatar · QACornell University · USNational Clonal Germplasm Repository for Citrus · USUniversidad de Murcia · ES

Funding

Qatar National Research Fund (QNRF) NPRP-EP X-014-4-001
6 · The paper itself

Abstract

The date palm tree is a commercially important member of the genus Phoenix whose 14 species are dioecious with separate male and female individuals. To identify sex determining genes we sequenced the genomes of 15 female and 13 male Phoenix trees representing all 14 species. We identified male-specific sequences and extended them using phased single-molecule sequencing or BAC clones. We observed that only four genes contained sequences conserved in all analyzed Phoenix males. Most of these sequences showed similarity to a single genomic locus in the closely related monoecious oil palm. CYP703 and GPAT3, two single copy genes present in males and critical for male flower development in other monocots, were absent in females. A LOG-like gene appears translocated into the Y-linked region and is suggested to play a role in suppressing female flowers. Our data are consistent with a two-mutation model for the evolution of dioecy in Phoenix.

Indexed as

Genes, PlantGenome, PlantHigh-Throughput Nucleotide SequencingModels, GeneticMutationOvulePhoeniceaePollenSpecies Specificity

Identifiers

PMID30266991
PMCPMC6162277
OpenAlexW2787795454

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.