Evidence map›Paper›PMID 30266906›Full record

ArticleNature communications2018

An iris diaphragm mechanism to gate a cyclic nucleotide-gated ion channel.

Arin Marchesi, Xiaolong Gao, Ricardo Adaixo, Jan Rheinberger, Henning Stahlberg, Crina Nimigean, Simon Scheuring

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 55 citations in OpenAlex.

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  15. CNG channel structure, function, and gating: a tale of conformational flexibility.Pflugers Archiv : European journal of physiology · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Arin MarchesiINSERM U1006, Aix-Marseille Université, Parc Scientifique et Technologique de Luminy, 163 Avenue de Luminy, 13009, Marseille, France.
Xiaolong GaoDepartment of Anesthesiology, Weill Cornell Medical College, 1300 York Ave, New York, NY, 10065, USA.
Ricardo AdaixoCenter for Cellular Imaging and NanoAnalytics, Biozentrum, University of Basel, Mattenstrasse 26, 4058, Basel, Switzerland.
Jan RheinbergerDepartment of Anesthesiology, Weill Cornell Medical College, 1300 York Ave, New York, NY, 10065, USA.
Henning StahlbergCenter for Cellular Imaging and NanoAnalytics, Biozentrum, University of Basel, Mattenstrasse 26, 4058, Basel, Switzerland.ORCID http://orcid.org/0000-0002-1185-4592
Crina NimigeanDepartment of Anesthesiology, Weill Cornell Medical College, 1300 York Ave, New York, NY, 10065, USA. crn2002@med.cornell.edu.
Simon ScheuringINSERM U1006, Aix-Marseille Université, Parc Scientifique et Technologique de Luminy, 163 Avenue de Luminy, 13009, Marseille, France. sis2019@med.cornell.edu.ORCID http://orcid.org/0000-0003-3534-069X
Cornell University · USInserm · FRUniversity of Basel · CH

Funding

Structural dynamics in cyclic nucleotide-modulated channelsR01GM124451 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI NIMIGEAN, CRINA M · 2017 to 2024
$3.2M
EC | European Research Council (ERC) 310080EC | Horizon 2020 (European Union Framework Programme for Research and Innovation) MSCA IF-2014-EF-655157European Molecular Biology Organization (EMBO) ALTF 1427-2014European Research Council 310080NIGMS NIH HHS R01 GM124451U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM124451
6 · The paper itself

Abstract

Cyclic nucleotide-gated (CNG) ion channels are non-selective cation channels key to signal transduction. The free energy difference of cyclic-nucleotide (cAMP/cGMP) binding/unbinding is translated into mechanical work to modulate the open/closed probability of the pore, i.e., gating. Despite the recent advances in structural determination of CNG channels, the conformational changes associated with gating remain unknown. Here we examine the conformational dynamics of a prokaryotic homolog of CNG channels, SthK, using high-speed atomic force microscopy (HS-AFM). HS-AFM of SthK in lipid bilayers shows that the CNBDs undergo dramatic conformational changes during the interconversion between the resting (apo and cGMP) and the activated (cAMP) states: the CNBDs approach the membrane and splay away from the 4-fold channel axis accompanied by a clockwise rotation with respect to the pore domain. We propose that these movements may be converted by the C-linker to pull the pore helices open in an iris diaphragm-like mechanism.

Indexed as

Ion Channel GatingProtein ConformationBacterial ProteinsCrystallography, X-RayCyclic AMPCyclic GMPCyclic Nucleotide-Gated Cation ChannelsMicroscopy, Atomic ForceModels, MolecularProtein BindingRotationSpirochaetaBacterial ProteinsCyclic AMPCyclic GMPCyclic Nucleotide-Gated Cation Channels

Identifiers

PMID30266906
PMCPMC6162275
OpenAlexW2892665911

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.