Evidence map›Paper›PMID 30265872›Full record

ArticleResearch in veterinary science2018

Molecular evolution of porcine epidemic diarrhea virus and porcine deltacoronavirus strains in Central China.

Dongliang Li, Hua Feng, Yunchao Liu, Yumei Chen, Qiang Wei, Juan Wang, Dongmin Liu, Huimin Huang, Yunfang Su, Dongyu Wang and 2 more

Abstract read
In one paragraph

Article in Research in veterinary science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Dongliang LiCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou 450002, China; Henan Provincial Key Laboratory of Animal immunology, Henan Academy of Agricultural Sciences, Zhengzhou 450000, Henan, China.
Hua FengHenan Provincial Key Laboratory of Animal immunology, Henan Academy of Agricultural Sciences, Zhengzhou 450000, Henan, China.
Yunchao LiuHenan Provincial Key Laboratory of Animal immunology, Henan Academy of Agricultural Sciences, Zhengzhou 450000, Henan, China.
Yumei ChenSchool of Life Sciences, Zhengzhou University, Zhengzhou 450001, China.
Qiang WeiHenan Provincial Key Laboratory of Animal immunology, Henan Academy of Agricultural Sciences, Zhengzhou 450000, Henan, China.
Juan WangHenan Zhongze Biological Engineering Co., Ltd., Zhengzhou 450019, China.
Dongmin LiuHenan Zhongze Biological Engineering Co., Ltd., Zhengzhou 450019, China.
Huimin HuangCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou 450002, China.
Yunfang SuHenan Provincial Key Laboratory of Animal immunology, Henan Academy of Agricultural Sciences, Zhengzhou 450000, Henan, China; College of Veterinary Medicine, Northwest Agriculture and Forestry University, Yangling, Shanxi 712100, China.
Dongyu WangCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou 450002, China.
Yinglei CuiCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou 450002, China.
Gaiping ZhangCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou 450002, China; Henan Provincial Key Laboratory of Animal immunology, Henan Academy of Agricultural Sciences, Zhengzhou 450000, Henan, China; College of Veterinary Medicine, Northwest Agriculture and Forestry University, Yangling, Shanxi 712100, China. Electronic address: zhanggaiping2003@163.com.
Henan Academy of Agricultural Sciences · CNHenan Agricultural University · CNHenan Science and Technology Department · CNZhengzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porcine epidemic diarrhea virus (PEDV) and porcine deltacoronavirus (PDCoV) are epizootic swine viruses. To detect and study the evolution of PEDV and PDCoV in central China (Shanxi, Henan, Hubei province), 70 clinical intestinal and fecal samples from piglets with severe watery diarrhea during August 2015 and June 2016 were collected, tested and analyzed. PEDV was more frequently detected by PCR than PDCoV. Phylogenetic analysis of S genes showed that the 10 PEDV strains from this study clustered into G2a (n = 7) and G2b (n = 3) groups. Additionally, the three G2b strains (PEDV S2△) contained the same specific 3 nt deletion in S2 as other reference strains in G2b. Interestingly, complete genome analysis indicated that CH/hubei/2016 was closer to the US INDEL strain and G2a group. CH/hubei/2016 had one recombination event in S2 gene which may have resulted from AH2012-12 (from G2b group) and CH-ZMDZY-11 (from G2a group). Furthermore, 10 purifying selection sites in S gene indicated an adaptive evolution of PEDV in central China swine herds. These results suggested that Pandemic G2a and G2b are predominant PEDV genotype circulating in central China. In addition, the deletion and recombination identified in S gene suggested PEDV strains of central exhibited an evolutionary variety. However, whether these changes affect the pathogenicity and antigenicity of wild PEDV is unknown and is worth for further investigation.

Indexed as

Evolution, MolecularAnimalsChinaCoronavirusCoronavirus InfectionsDiarrheaFecesGenotypePhylogenyPolymerase Chain ReactionSwineSwine DiseasesChinaDiversityPorcine deltacoronavirusPorcine epidemic diarrhea virusSpike gene

Identifiers

PMID30265872
PMCPMC7111851
OpenAlexW2807920529

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.