Evidence map›Paper›PMID 30265660›Full record

ArticlePLoS genetics2018

Non-proteolytic activity of 19S proteasome subunit RPT-6 regulates GATA transcription during response to infection.

Abiola O Olaitan, Alejandro Aballay

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Proteasomal subunit depletions differentially affect germline integrity inFrontiers in cell and developmental biology · 2022
    Article
  10. Ubiquitin-related processes and innate immunity in C. elegans.Cellular and molecular life sciences : CMLS · 2021
    Review
  11. Innate immunity in C. elegans.Current topics in developmental biology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Abiola O OlaitanDepartment of Molecular Microbiology & Immunology, Oregon Health & Science University, Portland, United States of America.
Alejandro AballayDepartment of Molecular Microbiology & Immunology, Oregon Health & Science University, Portland, United States of America.
Oregon Health & Science University · US

Funding

Genetic analysis of innate immunity using C. elegansR37GM070977 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Alejandro Aballay · 2017 to 2026
$3.8M
C. elegans to study organismal control of recovery from bacterial infectionsR01AI117911 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI ABALLAY, ALEJANDRO · 2016 to 2020
$1.9M
NIAID NIH HHS R01 AI117911NIGMS NIH HHS R37 GM070977
6 · The paper itself

Abstract

GATA transcription factors play a crucial role in the regulation of immune functions across metazoans. In Caenorhabditis elegans, the GATA transcription factor ELT-2 is involved in the control of not only infections but also recovery after an infection. We identified RPT-6, part of the 19S proteasome subunit, as an ELT-2 binding partner that is required for the proper expression of genes required for both immunity against bacterial infections and recovery after infection. We found that the intact ATPase domain of RPT-6 is required for the interaction and that inhibition of rpt-6 affected the expression of ELT-2-controlled genes, preventing the appropriate immune response against Pseudomonas aeruginosa and recovery from infection by the pathogen. Further studies indicated that SKN-1, which is an Nrf transcription factor involved in the response to oxidative stress and infection, is activated by inhibition of rpt-6. Our results indicate that RPT-6 interacts with ELT-2 in vivo to control the expression of immune genes in a manner that is likely independent of the proteolytic activity of the proteasome.

Indexed as

AnimalsAnimals, Genetically ModifiedATPases Associated with Diverse Cellular ActivitiesCaenorhabditis elegansCaenorhabditis elegans ProteinsGATA Transcription FactorsGene Expression RegulationGene Knockdown TechniquesHost-Pathogen InteractionsImmunity, InnateProteasome Endopeptidase ComplexProteasome InhibitorsProtein BindingPseudomonas aeruginosaRNA InterferenceTranscription, GeneticATPases Associated with Diverse Cellular ActivitiesCaenorhabditis elegans ProteinsELT-2 protein, C elegansGATA Transcription FactorsProteasome Endopeptidase ComplexProteasome InhibitorsRPT-6 protein, C elegans

Identifiers

PMID30265660
PMCPMC6179307
OpenAlexW2894407414

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.