Evidence map›Paper›PMID 30262839›Full record

Trial reportScientific reports2018

Genome-wide burden and association analyses implicate copy number variations in asthma risk among children and young adults from Latin America.

Pablo Oliveira, Gustavo N O Costa, Andresa K A Damasceno, Fernando P Hartwig, George C G Barbosa, Camila A Figueiredo, Rita de C Ribeiro-Silva, Alexandre Pereira, M Fernanda Lima-Costa, Fernanda S Kehdy and 5 more

Open access · goldAbstract readClinical TrialMulticenter Study
In one paragraph

Trial report in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Asthma-Genomic Advances Toward Risk Prediction.Clinics in chest medicine · 2024
    Review
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Sestrin2 is involved in asthma: a case-control study.Allergy, asthma, and clinical immunology : official journal of the Canadian Society of Allergy and Clinical Immunology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Pablo OliveiraInstitute of Collective Health, Federal University of Bahia, 40110-040, Salvador, Bahia, Brazil. pablorafael_ssa@hotmail.com.
Gustavo N O CostaInstitute of Collective Health, Federal University of Bahia, 40110-040, Salvador, Bahia, Brazil.ORCID http://orcid.org/0000-0003-3445-0192
Andresa K A DamascenoInstitute of Collective Health, Federal University of Bahia, 40110-040, Salvador, Bahia, Brazil.
Fernando P HartwigPostgraduate Program in Epidemiology, Federal University of Pelotas, 464, 96020-220, Pelotas, Rio Grande do Sul, Brazil.ORCID http://orcid.org/0000-0003-3729-0710
George C G BarbosaCenter for Data Integration and Knowledge for Health, Oswaldo Cruz Foundation, 41745-715, Salvador, Bahia, Brazil.
Camila A FigueiredoInstitute of Health Sciences, Federal University of Bahia, 40110-100, Salvador, Bahia, Brazil.
Rita de C Ribeiro-SilvaNutrition School, Federal University of Bahia, 40110-150, Salvador, Bahia, Brazil.
Alexandre PereiraHeart Institute, University of São Paulo, 05403-900, São Paulo, São Paulo, Brazil.
M Fernanda Lima-CostaRene Rachou Research Institute, Oswaldo Cruz Foundation, 30190-002, Belo Horizonte, Minas Gerais, Brazil.
Fernanda S KehdyLeprosy Laboratory, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, 21040-900, Rio de Janeiro, Rio de Janeiro, Brazil.
Eduardo Tarazona-SantosInstitute of Biological Sciences, Federal University of Minas Gerais, 31270-901, Belo Horizonte, Minas Gerais, Brazil.
Bernardo L HortaPostgraduate Program in Epidemiology, Federal University of Pelotas, 464, 96020-220, Pelotas, Rio Grande do Sul, Brazil.ORCID http://orcid.org/0000-0001-9843-412X
Laura C RodriguesDepartment of Infectious Disease Epidemiology, Faculty of Epidemiology, London School of Hygiene and Tropical Medicine, London, WC1E 7HT, UK.
Rosemeire L FiacconeDepartment of Statistics, Institute of Mathematics, Federal University of Bahia, 40170-110, Salvador, Bahia, Brazil.
Maurício L BarretoInstitute of Collective Health, Federal University of Bahia, 40110-040, Salvador, Bahia, Brazil.ORCID http://orcid.org/0000-0002-0215-4930
Universidade Federal da Bahia · BRFundação Oswaldo Cruz · BRUniversidade Federal de Pelotas · BRLondon School of Hygiene & Tropical Medicine · GBUniversidade de São Paulo · BRUniversidade Federal de Minas Gerais · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genetic architecture of asthma was relatively well explored. However, some work remains in the field to improve our understanding on asthma genetics, especially in non-Caucasian populations and with regards to commonly neglected genetic variants, such as Copy Number Variations (CNVs). In the present study, we investigated the contribution of CNVs on asthma risk among Latin Americans. CNVs were inferred from SNP genotyping data. Genome wide burden and association analyses were conducted to evaluate the impact of CNVs on asthma outcome. We found no significant difference in the numbers of CNVs between asthmatics and non-asthmatics. Nevertheless, we found that CNVs are larger in patients then in healthy controls and that CNVs from cases intersect significantly more genes and regulatory elements. We also found that a deletion at 6p22.1 is associated with asthma symptoms in children from Salvador (Brazil) and in young adults from Pelotas (Brazil). To support our results, we conducted an in silico functional analysis and found that this deletion spans several regulatory elements, including two promoter elements active in lung cells. In conclusion, we found robust evidence that CNVs could contribute for asthma susceptibility. These results uncover a new perspective on the influence of genetic factors modulating asthma risk.

Indexed as

Chromosome DeletionGene DosageGenetic Predisposition to DiseasePolymorphism, Single NucleotideAdultAsthmaBrazilChildChild, PreschoolChromosomes, Human, Pair 6FemaleHumansMale

Identifiers

PMID30262839
PMCPMC6160443
OpenAlexW2890898243

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.