Evidence map›Paper›PMID 30262602›Full record

ArticleBlood advances2018

Chromosome Y-encoded antigens associate with acute graft-versus-host disease in sex-mismatched stem cell transplant.

Wei Wang, Hu Huang, Michael Halagan, Cynthia Vierra-Green, Michael Heuer, Jason E Brelsford, Michael Haagenson, Richard H Scheuermann, Amalio Telenti, William Biggs and 5 more

Open access · goldAbstract read
In one paragraph

Article in Blood advances, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
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  5. Y-Chromosome-Linked Genes Are Associated With Sex-Related Head-Neck Squamous Cell Carcinoma Survival.Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Wei WangCenter for International Blood and Marrow Transplant Research, Minneapolis, MN.ORCID 0000-0003-3093-2274
Hu HuangCenter for International Blood and Marrow Transplant Research, Minneapolis, MN.ORCID 0000-0002-4384-3804
Michael HalaganCenter for International Blood and Marrow Transplant Research, Minneapolis, MN.
Cynthia Vierra-GreenCenter for International Blood and Marrow Transplant Research, Minneapolis, MN.
Michael HeuerCenter for International Blood and Marrow Transplant Research, Minneapolis, MN.
Jason E BrelsfordCenter for International Blood and Marrow Transplant Research, Minneapolis, MN.
Michael HaagensonCenter for International Blood and Marrow Transplant Research, Minneapolis, MN.
Richard H ScheuermannJ. Craig Venter Institute, La Jolla, CA.
Amalio TelentiJ. Craig Venter Institute, La Jolla, CA.
William BiggsHuman Longevity, Inc., San Diego, CA; and.
Nathaniel M PearsonRoot Deep Insight, Inc., Boston, MA.
Julia UdellCenter for International Blood and Marrow Transplant Research, Minneapolis, MN.
Stephen SpellmanCenter for International Blood and Marrow Transplant Research, Minneapolis, MN.
Martin MaiersCenter for International Blood and Marrow Transplant Research, Minneapolis, MN.ORCID 0000-0002-0198-2064
Caleb J KennedyCenter for International Blood and Marrow Transplant Research, Minneapolis, MN.
National Marrow Donor Program · USUniversity of Minnesota · USJ. Craig Venter Institute · USHuman Longevity (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Allogeneic hematopoietic stem cell transplantation (allo-HCT) is a curative option for blood cancers, but the coupled effects of graft-versus-tumor and graft-versus-host disease (GVHD) limit its broader application. Outcomes improve with matching at HLAs, but other factors are required to explain residual risk of GVHD. In an effort to identify genetic associations outside the major histocompatibility complex, we conducted a genome-wide clinical outcomes study on 205 acute myeloid leukemia patients and their fully HLA-A-, HLA-B-, HLA-C-, HLA-DRB1-, and HLA-DQB1-matched (10/10) unrelated donors. HLA-DPB1 T-cell epitope permissibility mismatches were observed in less than half (45%) of acute GVHD cases, motivating a broader search for genetic factors affecting clinical outcomes. A novel bioinformatics workflow adapted from neoantigen discovery found no associations between acute GVHD and known, HLA-restricted minor histocompatibility antigens (MiHAs). These results were confirmed with microarray data from an additional 988 samples. On the other hand, Y-chromosome-encoded single-nucleotide polymorphisms in 4 genes (PCDH11Y, USP9Y, UTY, and NLGN4Y) did associate with acute GVHD in male patients with female donors. Males in this category with acute GVHD had more Y-encoded variant peptides per patient with higher predicted HLA-binding affinity than males without GVHD who matched X-paralogous alleles in their female donors. Methods and results described here have an immediate impact for allo-HCT, warranting further development and larger genomic studies where MiHAs are clinically relevant, including cancer immunotherapy, solid organ transplant, and pregnancy.

Indexed as

Genes, Y-LinkedGenetic Association StudiesGenetic Predisposition to DiseaseAcute DiseaseAllelesAmino Acid SequenceAntigensChromosome MappingFemaleGraft vs Host DiseaseHematopoietic Stem Cell TransplantationHistocompatibility TestingHLA AntigensHumansMaleMinor Histocompatibility AntigensAntigensHLA AntigensMinor Histocompatibility Antigens

Identifiers

PMID30262602
PMCPMC6177651
OpenAlexW2893383899

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.