Evidence map›Paper›PMID 30261834›Full record

ArticleBMC genomics2018

Phylogenetic, comparative genomic and structural analyses of human Streptococcus agalactiae ST485 in China.

Rui Wang, Liping Li, Ting Huang, Yan Huang, Weiyi Huang, Xiuying Yang, Aiying Lei, Ming Chen

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Multidrug-ResistantMicroorganisms · 2020
    Article
  4. Antibiotic Resistance and Molecular Epidemiological Characteristics ofThe Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2020
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Rui WangGuangxi Key Laboratory for Aquatic Genetic Breeding and Healthy Aquaculture, Guangxi Academy of Fishery Sciences, Nanning, Guangxi, 530021, People's Republic of China.
Liping LiGuangxi Key Laboratory for Aquatic Genetic Breeding and Healthy Aquaculture, Guangxi Academy of Fishery Sciences, Nanning, Guangxi, 530021, People's Republic of China.
Ting HuangGuangxi Key Laboratory for Aquatic Genetic Breeding and Healthy Aquaculture, Guangxi Academy of Fishery Sciences, Nanning, Guangxi, 530021, People's Republic of China.
Yan HuangGuangxi Center for Disease Control and Prevention, Nanning, 530021, Guangxi, China.
Weiyi HuangInstitute of Animal Science and Technology, Guangxi University, Nanning, 530005, Guangxi, China.
Xiuying YangNational Medical College of Right Rivers, Baise, 533000, Guangxi, China.
Aiying LeiGuangxi Key Laboratory for Aquatic Genetic Breeding and Healthy Aquaculture, Guangxi Academy of Fishery Sciences, Nanning, Guangxi, 530021, People's Republic of China.
Ming ChenGuangxi Key Laboratory for Aquatic Genetic Breeding and Healthy Aquaculture, Guangxi Academy of Fishery Sciences, Nanning, Guangxi, 530021, People's Republic of China. cm990919@163.com.
Guangxi Academy of Fishery Sciences · CNGuangxi Center for Disease Prevention and Control · CNGuangxi University · CN

Funding

Guangxi innovation-driven development special funds AA17204081-3Guangxi Natural Science Foundation 2016GXNSFDA380020National Natural Science Foundation of China 31460695the funds of Guangxi Key Laboratory for Aquatic Genetic Breeding and Healthy Aquaculture 2016-2018
6 · The paper itself

Abstract

backgroundStreptococcus agalactiae (Group B Streptococcus, GBS) is a common bacteria species infecting both human and bovine. Previous studies have shown that the GBS isolated from human and bovine are mostly unrelated and belong to separate populations. However, recently, the bovine GBS CC103 has become the dominant epidemic strain and frequently isolated from human patients. In particular, the ST485 GBS, a member of CC103, has become the new dominant ST in China and exhibited very high pathogenicity. This phenomenon is not consistent with the established understanding about the relationship between bovine and human GBS, which needs to be re-investigated.

resultsThe genome-based phylogenetic analysis showed that the human and bovine GBS CC103 strains had very close genetic relationship and they were alternately distributed on the evolutionary tree. CC103 strains evolved into several branches, including the ST485, which exhibited high pathogenicity and specifically infected human. Compared to other CC103 strains, the ST485 lacked Lac.2 gene structure and acquired the CadDX gene structure in their genomes.

conclusionsOur results indicate that GBS CC103 could propagate across human and bovine, and GBS ST485 might evolve from the ST103 that could infect both human and bovine. Moreover, the recombination of Lac.2 and CadDX gene structures might play an important role in the formation of highly pathogenic ST485 in China.

Indexed as

Genome, BacterialAnimalsCattleCattle DiseasesChinaEvolution, MolecularHigh-Throughput Nucleotide SequencingHumansPhylogenyRecombination, GeneticSequence Analysis, DNAStreptococcal InfectionsStreptococcus agalactiaeCadDXCC103Cross infectionGroup B StreptococcusLac.2ST485

Identifiers

PMID30261834
PMCPMC6161333
OpenAlexW2892749969

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.