Evidence map›Paper›PMID 30261644›Full record

ArticleInternational journal of molecular sciences2018

Mapping the Contact Sites of the

Winfried Roseboom, Madhvi G Nazir, Nils Y Meiresonne, Tamimount Mohammadi, Jolanda Verheul, Hansuk Buncherd, Alexandre M J J Bonvin, Leo J de Koning, Chris G de Koster, Luitzen de Jong and 1 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. The In Vitro Non-Tetramerizing ZapAInternational journal of molecular sciences · 2020
    Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Winfried RoseboomMass Spectrometry of Biomacromolecules, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands. w.roseboom@uva.nl.
Madhvi G NazirBacterial Cell Biology and Physiology, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands. madhvinazir@gmail.com.
Nils Y MeiresonneBacterial Cell Biology and Physiology, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands. N.Y.Meiresonne@uva.nl.ORCID 0000-0001-9184-4361
Tamimount MohammadiBacterial Cell Biology and Physiology, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands. tamimohammadi@gmail.com.
Jolanda VerheulBacterial Cell Biology and Physiology, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands. j.verheul@uva.nl.
Hansuk BuncherdMass Spectrometry of Biomacromolecules, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands. hansuk.bu@psu.ac.th.
Alexandre M J J BonvinComputational Structural Biology, Faculty of Science-Chemistry, University of Utrecht, Padualaan 83584CH Utrecht, The Netherlands. a.m.j.j.bonvin@uu.nl.ORCID 0000-0001-7369-1322
Leo J de KoningMass Spectrometry of Biomacromolecules, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands. L.J.deKoning@uva.nl.
Chris G de KosterMass Spectrometry of Biomacromolecules, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands. C.G.deKoster@uva.nl.
Luitzen de JongMass Spectrometry of Biomacromolecules, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands. LuitzendeJong@kpnmail.nl.
Tanneke den BlaauwenBacterial Cell Biology and Physiology, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands. T.denBlaauwen@uva.nl.ORCID 0000-0002-5403-5597
University of Amsterdam · NLPrince of Songkla University · THUtrecht University · NL

Funding

European Commission FP7-Health-2007-B-223431Nederlandse Organisatie voor Wetenschappelijk Onderzoek 822.02.019
6 · The paper itself

Abstract

Cell division in bacteria is initiated by the polymerization of FtsZ at midcell in a ring-like structure called the Z-ring. ZapA and other proteins assist Z-ring formation and ZapA binds ZapB, which senses the presence of the nucleoids. The FtsZ⁻ZapA binding interface was analyzed by chemical cross-linking mass spectrometry (CXMS) under in vitro FtsZ-polymerizing conditions in the presence of GTP. Amino acids residue K42 from ZapA was cross-linked to amino acid residues K51 and K66 from FtsZ, close to the interphase between FtsZ molecules in protofilaments. Five different cross-links confirmed the tetrameric structure of ZapA. A number of FtsZ cross-links suggests that its C-terminal domain of 55 residues, thought to be largely disordered, has a limited freedom to move in space. Site-directed mutagenesis of ZapA reveals an interaction site in the globular head of the protein close to K42. Using the information on the cross-links and the mutants that lost the ability to interact with FtsZ, a model of the FtsZ protofilament⁻ZapA tetramer complex was obtained by information-driven docking with the HADDOCK2.2 webserver.

Indexed as

Amino Acid SequenceBacterial ProteinsBinding SitesCarrier ProteinsCell DivisionCross-Linking ReagentsCytoskeletal ProteinsEscherichia coliEscherichia coli ProteinsLysineMass SpectrometryMolecular Docking SimulationMutagenesis, Site-DirectedProtein BindingProtein DomainsProtein MultimerizationBacterial ProteinsCarrier ProteinsCross-Linking ReagentsCytoskeletal ProteinsEscherichia coli ProteinsFtsZ protein, BacteriaLysineZapA protein, E coli1,4-bis(succimidyl)-3-azidomethylglutarate (BAMG)cell divisionFilamenting temperature sensitive Z (FtsZ)Fourier-Transform Ion Cyclotron Resonance mass spectrometry(FTICR)quadrupole time of flight mass spectrometer (QTOF)Z associated protein A (ZapA)

Identifiers

PMID30261644
PMCPMC6213154
OpenAlexW2894234217

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.