Evidence map›Paper›PMID 30260988›Full record

ArticlePloS one2018

Identification of a novel zinc-binding protein, C1orf123, as an interactor with a heavy metal-associated domain.

Yoshiaki Furukawa, Carolyn Lim, Takehiko Tosha, Koki Yoshida, Tomoaki Hagai, Shuji Akiyama, Shoji Watanabe, Kenta Nakagome, Yoshitsugu Shiro

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
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  9. Proteomic Analyses ofFrontiers in cellular and infection microbiology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Yoshiaki FurukawaDepartment of Chemistry, Keio University, Yokohama, Kanagawa, Japan.ORCID 0000-0002-1918-372X
Carolyn LimDepartment of Chemistry, Keio University, Yokohama, Kanagawa, Japan.
Takehiko ToshaRIKEN SPring-8 Center, Sayo, Hyogo, Japan.ORCID 0000-0002-8971-0759
Koki YoshidaDepartment of Chemistry, Keio University, Yokohama, Kanagawa, Japan.
Tomoaki HagaiDepartment of Chemistry, Keio University, Yokohama, Kanagawa, Japan.
Shuji AkiyamaResearch Center of Integrative Molecular Systems (CIMoS), Institute for Molecular Science, NINS, Okazaki, Aichi, Japan.
Shoji WatanabeGraduate School of Brain Science, Doshisha University, Kyotanabe, Kyoto, Japan.
Kenta NakagomeDepartment of Chemistry, Keio University, Yokohama, Kanagawa, Japan.
Yoshitsugu ShiroGraduate School of Life Science, University of Hyogo, Ako, Hyogo, Japan.
Keio University · JPDoshisha University · JPSPring-8 · JPThe Graduate University for Advanced Studies, SOKENDAI · JPUniversity of Hyogo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Heavy metal-associated (HMA) domains bind metal ions at its Cys-x-x-Cys (CxxC) motif and constitute an intracellular network for trafficking of metal ions for utilization and detoxification. We thus expect that novel metalloproteins can be identified by screening proteins interacting with a HMA domain. In this study, we performed yeast two-hybrid screening of the human proteome and found an uncharacterized protein encoded as open reading frame 123 in chromosome 1 (C1orf123) that can interact specifically with the HMA domain of a copper chaperone for superoxide dismutase (CCSdI). Our X-ray structural analysis of C1orf123 further revealed that it binds a Zn2+ ion in a tetrahedral coordination with four thiolate groups from two conserved CxxC motifs. For the interaction between C1orf123 and CCSdI, the CxxC motifs in both C1orf123 and CCSdI were required, implying metal-mediated interaction through the CxxC motifs. Notably, C1orf123 did not interact with several other HMA domains containing CxxC motifs, supporting high specificity in the interaction between C1orf123 and CCSdI. Based upon these results, we further discuss functional and structural significance of the interaction between C1orf123 and CCS.

Indexed as

Amino Acid SequenceCations, DivalentEscherichia coliHumansMembrane Transport ProteinsMetals, HeavyModels, MolecularProtein BindingProtein DomainsProteinsProtein Structure, SecondarySolutionsStatic ElectricityStructure-Activity RelationshipSuperoxide DismutaseTwo-Hybrid System TechniquesCations, DivalentCZIB protein, humanMembrane Transport ProteinsMetals, HeavyProteinsSolutionsSuperoxide DismutaseZinc

Identifiers

PMID30260988
PMCPMC6160046
OpenAlexW2894103608

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.