Evidence map›Paper›PMID 30260431›Full record

ArticleNucleic acids research2018

Protein Syndesmos is a novel RNA-binding protein that regulates primary cilia formation.

Rosario Avolio, Aino I Järvelin, Shabaz Mohammed, Ilenia Agliarulo, Valentina Condelli, Pietro Zoppoli, Giovanni Calice, Daniela Sarnataro, Elias Bechara, Gian G Tartaglia and 4 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

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  14. Proximity Ligation Assay for Detection of R-Loop Complexes upon DNA Damage.Methods in molecular biology (Clifton, N.J.) · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 3 countries.

Rosario AvolioDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, Via S. Pansini 5, 80131 Napoli, Italy.
Aino I JärvelinDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.
Shabaz MohammedProteomics Technology Development and Application, Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.
Ilenia AgliaruloDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, Via S. Pansini 5, 80131 Napoli, Italy.
Valentina CondelliLaboratory of Pre-clinical and Translational Research, IRCCS, Referral Cancer Center of Basilicata, 85028 Rionero in Vulture, Italy.
Pietro ZoppoliLaboratory of Pre-clinical and Translational Research, IRCCS, Referral Cancer Center of Basilicata, 85028 Rionero in Vulture, Italy.
Giovanni CaliceLaboratory of Pre-clinical and Translational Research, IRCCS, Referral Cancer Center of Basilicata, 85028 Rionero in Vulture, Italy.
Daniela SarnataroDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, Via S. Pansini 5, 80131 Napoli, Italy.
Elias BecharaCentre for Genomic Regulation (CRG), Dr. Aiguader St. 88, 08003 Barcelona, Spain.
Gian G TartagliaCentre for Genomic Regulation (CRG), Dr. Aiguader St. 88, 08003 Barcelona, Spain.
Matteo LandriscinaLaboratory of Pre-clinical and Translational Research, IRCCS, Referral Cancer Center of Basilicata, 85028 Rionero in Vulture, Italy.
Alfredo CastelloDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.
Franca EspositoDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, Via S. Pansini 5, 80131 Napoli, Italy.
Danilo S MatassaDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, Via S. Pansini 5, 80131 Napoli, Italy.
University of Naples Federico II · ITCentro di Riferimento Oncologico della Basilicata · ITUniversity of Oxford · GBCentre for Genomic Regulation · ESCeinge Biotecnologie Avanzate (Italy) · ITUniversity of Foggia · IT

Funding

Medical Research Council MC_UU_12014/10Medical Research Council MR/L019434/1
6 · The paper itself

Abstract

Syndesmos (SDOS) is a functionally poorly characterized protein that directly interacts with p53 binding protein 1 (53BP1) and regulates its recruitment to chromatin. We show here that SDOS interacts with another important cancer-linked protein, the chaperone TRAP1, associates with actively translating polyribosomes and represses translation. Moreover, we demonstrate that SDOS directly binds RNA in living cells. Combining individual gene expression profiling, nucleotide crosslinking and immunoprecipitation (iCLIP), and ribosome profiling, we discover several crucial pathways regulated post-transcriptionally by SDOS. Among them, we identify a small subset of mRNAs responsible for the biogenesis of primary cilium that have been linked to developmental and degenerative diseases, known as ciliopathies, and cancer. We discover that SDOS binds and regulates the translation of several of these mRNAs, controlling cilia development.

Indexed as

CiliaCiliopathiesHCT116 CellsHeLa CellsHSP90 Heat-Shock ProteinsHumansNeoplasmsPolyribosomesProtein BindingProtein BiosynthesisProtein Interaction Domains and MotifsProtein Structure, TertiaryRNA-Binding ProteinsHSP90 Heat-Shock ProteinsNUDT16L1 protein, humanRNA-Binding ProteinsTRAP1 protein, human

Identifiers

PMID30260431
PMCPMC6294507
OpenAlexW2893004039

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.