Evidence map›Paper›PMID 30259328›Full record

ArticleMolecular biology reports2018

Development and characterization of nine polymorphic microsatellite markers for the deep-sea scleractinian coral Deltocyathus magnificus using paired-end Illumina shotgun sequencing.

Shang-Yin Vanson Liu, Yu-Rong Cheng

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular biology reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Shang-Yin Vanson LiuDepartment of Marin Biotechnology and Resources, National Sun Yat-sen University, Kaohsiung, Taiwan. syvliu@mail.nsysu.edu.tw.ORCID http://orcid.org/0000-0002-9472-3941
Yu-Rong ChengDepartment of Fisheries Production and Management, National Kaohsiung University of Science and Technology, Kaohsiung, Taiwan.

Funding

Ministry of Science and Technology, Taiwan MOST 104-2611-M-110-022-MY2
6 · The paper itself

Abstract

Deltocyathus magnificus is an azooxanthellae deep-sea scleractinian coral species that is distributed in the Indo-Pacific region. In order to investigate its genetic structure and connectivity, polymorphic microsatellite markers were isolated and tested on 37 individuals collected from the South China Sea. Twenty loci were selected and primers synthesized for further PCR testing. Nine of 20 were amplified successfully with polymorphism markers. The number of alleles detected in each locus ranged from 2 to 13. The expected and observed heterozygosities of these loci were 0.053-0.819 and 0.054-0.946, respectively. These nine novel polymorphic loci were used to reveal the genetic connectivity pattern among depths and geographic locations in the South China Sea.

Indexed as

AllelesAnimalsAnthozoaChinaGene FrequencyGenetic LociGenetic MarkersGenetics, PopulationHeterozygoteHigh-Throughput Nucleotide SequencingMicrosatellite RepeatsMolecular Diagnostic TechniquesPolymorphism, GeneticGenetic MarkersAsexual reproductionConnectivityGenetic structureMicrosatelliteShotgun sequencing

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.