Evidence map›Paper›PMID 30259100›Full record

ArticleApplied microbiology and biotechnology2018

Evaluation of promoter sequences for the secretory production of a Clostridium thermocellum cellulase in Paenibacillus polymyxa.

Simon Heinze, Kerstin Zimmermann, Christina Ludwig, Stephanie Heinzlmeir, Wolfgang H Schwarz, Vladimir V Zverlov, Wolfgang Liebl, Petra Kornberger

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Applied microbiology and biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Promising non-model microbial cell factories obtained by genome reduction.Frontiers in bioengineering and biotechnology · 2024
    Review
  4. Article
  5. Living the Sweet Life: HowFoods (Basel, Switzerland) · 2020
    Article
  6. Chronicle of a Soil Bacterium:Frontiers in microbiology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Simon HeinzeDepartment of Microbiology, Technical University of Munich, Emil-Ramann-Str. 4, D-85354, Freising-Weihenstephan, Germany.
Kerstin ZimmermannDepartment of Microbiology, Technical University of Munich, Emil-Ramann-Str. 4, D-85354, Freising-Weihenstephan, Germany.
Christina LudwigBavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University of Munich, Gregor-Mendel-Strasse 4, D-85354, Freising, Germany.
Stephanie HeinzlmeirBavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University of Munich, Gregor-Mendel-Strasse 4, D-85354, Freising, Germany.
Wolfgang H SchwarzDepartment of Microbiology, Technical University of Munich, Emil-Ramann-Str. 4, D-85354, Freising-Weihenstephan, Germany.
Vladimir V ZverlovDepartment of Microbiology, Technical University of Munich, Emil-Ramann-Str. 4, D-85354, Freising-Weihenstephan, Germany.
Wolfgang LieblDepartment of Microbiology, Technical University of Munich, Emil-Ramann-Str. 4, D-85354, Freising-Weihenstephan, Germany. wliebl@wzw.tum.de.
Petra KornbergerDepartment of Microbiology, Technical University of Munich, Emil-Ramann-Str. 4, D-85354, Freising-Weihenstephan, Germany. petra.kornberger@tum.de.ORCID http://orcid.org/0000-0002-5466-4174
Technical University of Munich · DEKurchatov Institute · RU

Funding

Bundesministerium für Bildung und Forschung 031A555
6 · The paper itself

Abstract

Due to their high secretion capacity, Gram-positive bacteria from the genus Bacillus are important expression hosts for the high-yield production of enzymes in industrial biotechnology; however, to date, strains from only few Bacillus species are used for enzyme production at industrial scale. Herein, we introduce Paenibacillus polymyxa DSM 292, a member of a different genus, as a novel host for secretory protein production. The model gene cel8A from Clostridium thermocellum was chosen as an easily detectable reporter gene with industrial relevance to demonstrate heterologous expression and secretion in P. polymyxa. The yield of the secreted cellulase Cel8A protein was increased by optimizing the expression medium and testing several promoter sequences in the expression plasmid pBACOV. Quantitative mass spectrometry was used to analyze the secretome in order to identify promising new promoter sequences from the P. polymyxa genome itself. The most abundantly secreted host proteins were identified, and the promoters regulating the expression of their corresponding genes were selected. Eleven promoter sequences were cloned and tested, including well-characterized promoters from Bacillus subtilis and Bacillus megaterium. The best result was achieved with the promoter for the hypothetical protein PPOLYM_03468 from P. polymyxa. In combination with the optimized expression medium, this promoter enabled the production of 5475 U/l of Cel8A, which represents a 6.2-fold increase compared to the reference promoter P

Indexed as

Promoter Regions, GeneticAcetivibrio thermocellusBacillus megateriumBacillus subtilisBacterial ProteinsCellulaseCulture MediaGene Expression Regulation, BacterialGenes, BacterialGenes, ReporterGenetic VectorsIndustrial MicrobiologyPaenibacillus polymyxaBacterial ProteinsCellulaseCulture MediaCel8AHeterologous expressionMedium optimizationSecretome analysisSignal peptideStrain development

Identifiers

PMID30259100
OpenAlexW2893978593

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.