Evidence map›Paper›PMID 30258215›Full record

ArticleScientific reports2018

Surveying the genome and constructing a high-density genetic map of napiergrass (Cenchrus purpureus Schumach).

Dev Paudel, Baskaran Kannan, Xiping Yang, Karen Harris-Shultz, Mahendar Thudi, Rajeev K Varshney, Fredy Altpeter, Jianping Wang

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
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  5. Review
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  10. Article
  11. A Resequencing-Based Ultradense Genetic Map ofFrontiers in microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Dev PaudelAgronomy Department, IFAS, University of Florida, Gainesville, FL, 32611, USA.ORCID http://orcid.org/0000-0002-0739-4343
Baskaran KannanAgronomy Department, IFAS, University of Florida, Gainesville, FL, 32611, USA.ORCID http://orcid.org/0000-0003-3082-9963
Xiping YangAgronomy Department, IFAS, University of Florida, Gainesville, FL, 32611, USA.
Karen Harris-ShultzCrop Genetics and Breeding Research Unit, USDA-Agricultural Research Service, 115 Coastal Way, Tifton, GA, 31793, USA.
Mahendar ThudiCenter of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, 502324, Telangana State, India.ORCID http://orcid.org/0000-0003-2851-6837
Rajeev K VarshneyCenter of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, 502324, Telangana State, India.ORCID http://orcid.org/0000-0002-4562-9131
Fredy AltpeterAgronomy Department, IFAS, University of Florida, Gainesville, FL, 32611, USA.
Jianping WangAgronomy Department, IFAS, University of Florida, Gainesville, FL, 32611, USA. wangjp@ufl.edu.ORCID http://orcid.org/0000-0002-0259-1508

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Napiergrass (Cenchrus purpureus Schumach) is a tropical forage grass and a promising lignocellulosic biofuel feedstock due to its high biomass yield, persistence, and nutritive value. However, its utilization for breeding has lagged behind other crops due to limited genetic and genomic resources. In this study, next-generation sequencing was first used to survey the genome of napiergrass. Napiergrass sequences displayed high synteny to the pearl millet genome and showed expansions in the pearl millet genome along with genomic rearrangements between the two genomes. An average repeat content of 27.5% was observed in napiergrass including 5,339 simple sequence repeats (SSRs). Furthermore, to construct a high-density genetic map of napiergrass, genotyping-by-sequencing (GBS) was employed in a bi-parental population of 185 F

Indexed as

Genome, PlantCenchrusChromosome MappingGenetic LinkageHigh-Throughput Nucleotide SequencingPennisetumPlant BreedingPolymorphism, Single NucleotideQuantitative Trait LociSynteny

Identifiers

PMID30258215
PMCPMC6158254

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.