Evidence map›Paper›PMID 30258188›Full record

ArticleScientific reports2018

Genetic diversity of strawberry germplasm using metabolomic biomarkers.

José G Vallarino, Francisco de Abreu E Lima, Carmen Soria, Hao Tong, Delphine M Pott, Lothar Willmitzer, Alisdair R Fernie, Zoran Nikoloski, Sonia Osorio

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Journal of agricultural and food chemistry · 2026
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  14. Article
  15. Allelic Variation ofThe Plant cell · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

José G VallarinoInstituto de Hortofruticultura Subtropical y Mediterránea "La Mayora" - University of Malaga- Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), Department of Molecular Biology and Biochemistry; Campus de Teatinos, 29071, Málaga, Spain.
Francisco de Abreu E LimaMax-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.ORCID http://orcid.org/0000-0002-2915-1991
Carmen SoriaInstituto Andaluz de Investigación y Formación Agraria y Pesquera (IFAPA), Centro de Churriana, Málaga, Spain.
Hao TongMax-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.
Delphine M PottInstituto de Hortofruticultura Subtropical y Mediterránea "La Mayora" - University of Malaga- Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), Department of Molecular Biology and Biochemistry; Campus de Teatinos, 29071, Málaga, Spain.
Lothar WillmitzerMax-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.
Alisdair R FernieMax-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.
Zoran NikoloskiMax-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany. nikoloski@mpimp-golm.mpg.de.
Sonia OsorioInstituto de Hortofruticultura Subtropical y Mediterránea "La Mayora" - University of Malaga- Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), Department of Molecular Biology and Biochemistry; Campus de Teatinos, 29071, Málaga, Spain. sosorio@uma.es.

Funding

EC | European Research Council (ERC) grant agreement number 679303Ministerio de Economía y Competitividad (Ministry of Economy and Competitiveness) AGR12-40066-CO2-02Ministerio de Economía y Competitividad (Ministry of Economy and Competitiveness) BES-2013-062856Ministerio de Economía y Competitividad (Ministry of Economy and Competitiveness) RYC-09170
6 · The paper itself

Abstract

High-throughput metabolomics technologies can provide the quantification of metabolites levels across various biological processes in different tissues, organs and species, allowing the identification of genes underpinning these complex traits. Information about changes of metabolites during strawberry development and ripening processes is key to aiding the development of new approaches to improve fruit attributes. We used network-based methods and multivariate statistical approaches to characterize and investigate variation in the primary and secondary metabolism of seven domesticated and seven wild strawberry fruit accessions at three different fruit development and ripening stages. Our results demonstrated that Fragaria sub-species can be identified solely based on the gathered metabolic profiles. We also showed that domesticated accessions displayed highly similar metabolic changes due to shared domestication history. Differences between domesticated and wild accessions were detected at the level of metabolite associations which served to rank metabolites whose regulation was mostly altered in the process of domestication. The discovery of comprehensive metabolic variation among strawberry accessions offers opportunities to probe into the genetic basis of variation, providing insights into the pathways to relate metabolic variation with important traits.

Indexed as

DomesticationFragariaFruitGene Expression Regulation, PlantGenetic VariationMetabolomeMetabolomicsSecondary Metabolism

Identifiers

PMID30258188
PMCPMC6158285

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.