Evidence map›Paper›PMID 30257643›Full record

ArticleBMC genomics2018

Identification, characterization and expression analysis of the VQ motif-containing gene family in tea plant (Camellia sinensis).

Junhong Guo, Jiangfei Chen, Jiankun Yang, Youben Yu, Yajun Yang, Weidong Wang

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Overexpression of the potatoFrontiers in plant science · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Activation of the VQ Motif-Containing Protein GenePlants (Basel, Switzerland) · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Junhong GuoCollege of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Jiangfei ChenCollege of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Jiankun YangCollege of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Youben YuCollege of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Yajun YangCollege of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Weidong WangCollege of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China. wangweidong@nwafu.edu.cn.
Northwest A&F University · CN

Funding

China Postdoctoral Science Foundation 2016M602873earmarked fund for Modern Agro-industry Technology Research System CARS-19Fundamental Research Funds for the Central Universities 2452017074
6 · The paper itself

Abstract

backgroundVQ motif-containing (VQ) proteins are plant-specific proteins that interact with WRKY transcription factors and play important roles in plant growth, development and stress response. To date, VQ gene families have been identified and characterized in many plant species, including Arabidopsis, rice and grapevine. However, the VQ gene family in tea plant has not been reported, and the biological functions of this family remain unknown.

resultsIn total, 25 CsVQ genes were identified based on the genome and transcriptome of tea plant, and a comprehensive bioinformatics analysis was performed. The CsVQ proteins all contained the typical conserved motif FxxhVQxhTG, and most proteins were localized in the nucleus. The phylogenetic analysis showed that the VQ proteins were classified into 5 groups (I, III-VI); the evolution of the CsVQ proteins is consistent with the evolutionary process of plants, and close proteins shared similar structures and functions. In addition, the expression analysis revealed that the CsVQ genes play important roles in the process of tea plant growth, development and response to salt and drought stress. Furthermore, a potential regulatory network including the interactions of CsVQ proteins with CsWRKY transcription factors and the regulation of upstream microRNA that is closely related to the above-mentioned processes is proposed.

conclusionsThe results of this study increase our understanding and characterization of CsVQ genes and their encoded proteins in tea plant. This systematic analysis provided comprehensive information for further studies investigating the biological functions of CsVQ proteins in various developmental processes of tea plants.

Indexed as

Amino Acid MotifsCamellia sinensisCell NucleusEvolution, MolecularGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGene Regulatory NetworksMicroRNAsMultigene FamilyPlant ProteinsTrans-ActivatorsTranscription FactorsMicroRNAsPlant ProteinsTrans-ActivatorsTranscription FactorsDrought stressExpression profilingSalt stressTea plantVQ gene

Identifiers

PMID30257643
PMCPMC6158892
OpenAlexW2893047362

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.