Evidence map›Paper›PMID 30257220›Full record

ArticleCell reports2018

Single-Cell RNA-Seq Uncovers a Robust Transcriptional Response to Morphine by Glia.

Denis Avey, Sumithra Sankararaman, Aldrin K Y Yim, Ruteja Barve, Jeffrey Milbrandt, Robi D Mitra

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed, 1 pooled it
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 1 synthesis or guideline pooled it, 161 citations in OpenAlex.

  1. Pooled it
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28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Denis AveyDepartment of Genetics, Washington University, School of Medicine, St. Louis, MO 63110, USA; Center for Genome Sciences and Systems Biology, Washington University, School of Medicine, St. Louis, MO 63110, USA.
Sumithra SankararamanCenter for Genome Sciences and Systems Biology, Washington University, School of Medicine, St. Louis, MO 63110, USA.
Aldrin K Y YimDepartment of Genetics, Washington University, School of Medicine, St. Louis, MO 63110, USA.
Ruteja BarveGenome Technology Access Center, Department of Genetics. Washington University, School of Medicine, St. Louis, MO 63110, USA.
Jeffrey MilbrandtDepartment of Genetics, Washington University, School of Medicine, St. Louis, MO 63110, USA. Electronic address: jmilbrandt@wustl.edu.
Robi D MitraDepartment of Genetics, Washington University, School of Medicine, St. Louis, MO 63110, USA; Center for Genome Sciences and Systems Biology, Washington University, School of Medicine, St. Louis, MO 63110, USA. Electronic address: rmitra@wustl.edu.
Washington University in St. Louis · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI TIMOTHY J. EBERLEIN · 2001 to 2026
$128.0M
TRAINING IN THE IMMUNOBIOLOGY AND MOLECULAR CELL BIOLOGY OF CANCERT32CA009547 · NCI · WASHINGTON UNIVERSITY · PI ROBERT DAVID SCHREIBER · 1986 to 2026
$12.1M
PHYSIOLOGY AND GENETICS OF THE GDNF HOMOLOG NEURTURINR01AG013730 · NIA · WASHINGTON UNIVERSITY · PI JEFFREY D MILBRANDT · 1996 to 2026
$10.6M
Washington University Intellectual and Developmental Disabilities Research Center-Administrative Down Syndrome SupplementU54HD087011 · NICHD · WASHINGTON UNIVERSITY · PI CONSTANTINO, JOHN N. · 2015 to 2019
$7.1M
AN INDUCIBLE MOLECULAR MEMORY SYSTEM TO RECORD TRANSIENT STATES OF CNS CELLSU01MH109133 · NIMH · WASHINGTON UNIVERSITY · PI MITRA, ROBI D · 2015 to 2017
$3.6M
PARALLEL ANALYSIS OF TRANSCRIPTION AND PROTEIN-DNAINTERACTIONS IN SINGLE CNS CELLSRF1MH117070 · NIMH · WASHINGTON UNIVERSITY · PI DOUGHERTY, JOSEPH D, MITRA, ROBI D · 2018 to 2020
$3.2M
COOPERATIVITY AND COLLECTIVE BINDING IN TRANSCRIPTION FACTOR-DNA INTERACTIONSR01GM123203 · NIGMS · WASHINGTON UNIVERSITY · PI MITRA, ROBI D · 2018 to 2021
$1.6M
UNDERSTANDING THE COMPLEX RELATIONSHIP BETWEEN TF BINDING AND GENE EXPRESSIONR01GM129126 · NIGMS · WASHINGTON UNIVERSITY · PI BRENT, MICHAEL R · 2018 to 2019
$626k
Metabolic Regulation of the Schwann Cell Injury ResponseR56NS099314 · NINDS · WASHINGTON UNIVERSITY · PI MILBRANDT, JEFFREY D · 2017 to 2017
$477k
Manipulation of kinase signaling by the human oncovirus KSHVF31CA183250 · NCI · FLORIDA STATE UNIVERSITY · PI AVEY, DENIS · 2014 to 2015
$71k
NCI NIH HHS F31 CA183250NCI NIH HHS P30 CA091842NCI NIH HHS T32 CA009547NIA NIH HHS R01 AG013730NICHD NIH HHS U54 HD087011NIGMS NIH HHS R01 GM123203NIGMS NIH HHS R01 GM129126NIMH NIH HHS RF1 MH117070NIMH NIH HHS U01 MH109133NINDS NIH HHS R56 NS099314
6 · The paper itself

Abstract

Molecular and behavioral responses to opioids are thought to be primarily mediated by neurons, although there is accumulating evidence that other cell types play a prominent role in drug addiction. To investigate cell-type-specific opioid responses, we performed single-cell RNA sequencing (scRNA-seq) of the nucleus accumbens of mice following acute morphine treatment. Differential expression analysis uncovered unique morphine-dependent transcriptional responses by oligodendrocytes and astrocytes. We examined the expression of selected genes, including Cdkn1a and Sgk1, by FISH, confirming their induction by morphine in oligodendrocytes. Further analysis using RNA-seq of FACS-purified oligodendrocytes revealed a large cohort of morphine-regulated genes. The affected genes are enriched for roles in cellular pathways intimately linked to oligodendrocyte maturation and myelination, including the unfolded protein response. Altogether, our data illuminate the morphine-dependent transcriptional response by oligodendrocytes and offer mechanistic insights into myelination defects associated with opioid abuse.

Indexed as

TranscriptomeAnalgesics, OpioidAnimalsCyclin-Dependent Kinase Inhibitor p21Immediate-Early ProteinsMaleMiceMice, Inbred C57BLMorphineNeurogliaNucleus AccumbensProtein Serine-Threonine KinasesRNA, MessengerSerum-Glucocorticoid Regulated KinasesSingle-Cell AnalysisAnalgesics, OpioidCdkn1a protein, mouseCyclin-Dependent Kinase Inhibitor p21Immediate-Early ProteinsMorphineProtein Serine-Threonine KinasesRNA, MessengerSerum-Glucocorticoid Regulated Kinasesaddictionglucocorticoidmorphinemyelinnucleus accumbensoligodendrocyteopioidRNA-seqsingle-cellUPR

Identifiers

PMID30257220
PMCPMC6357782
OpenAlexW2893701755

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.