Evidence map›Paper›PMID 30256984›Full record

ArticleHuman molecular genetics2019

Dominant negative GPR161 rare variants are risk factors of human spina bifida.

Sung-Eun Kim, Yunping Lei, Sun-Hee Hwang, Bogdan J Wlodarczyk, Saikat Mukhopadhyay, Gary M Shaw, M Elizabeth Ross, Richard H Finnell

Abstract read
In one paragraph

Article in Human molecular genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Identification of novel interacting proteins of FUZ and GPR161.bioRxiv : the preprint server for biology · 2025
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  5. Article
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  9. The novel linkage betweenbioRxiv : the preprint server for biology · 2024
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  13. Deficiency ofFrontiers in cell and developmental biology · 2023
    Article
  14. Article
  15. Systems biology analysis of human genomes points to key pathways conferring spina bifida risk.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Article
  17. Identification of new candidate genes for spina bifida through exome sequencing.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2021
    Article
  18. Review
  19. Frontiers in genetics · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Sung-Eun KimDepartment of Pediatrics, Dell Pediatric Research Institute, University of Texas at Austin Dell Medical School, Austin, TX, USA.
Yunping LeiDepartment of Pediatrics, Dell Pediatric Research Institute, University of Texas at Austin Dell Medical School, Austin, TX, USA.
Sun-Hee HwangDepartment of Cell Biology, UT Southwestern Medical Center, Dallas, TX, USA.
Bogdan J WlodarczykDepartment of Pediatrics, Dell Pediatric Research Institute, University of Texas at Austin Dell Medical School, Austin, TX, USA.
Saikat MukhopadhyayDepartment of Cell Biology, UT Southwestern Medical Center, Dallas, TX, USA.
Gary M ShawDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA, USA.
M Elizabeth RossCenter for Neurogenetics, Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.
Richard H FinnellDepartment of Pediatrics, Dell Pediatric Research Institute, University of Texas at Austin Dell Medical School, Austin, TX, USA.
Baylor College of Medicine · USSouthwestern Medical Center · USCornell University · USDell Children's Medical Center of Central Texas · USStanford University · US

Funding

Risk Genes and Environment Interactions in NTDsP01HD067244 · NICHD · WEILL MEDICAL COLL OF CORNELL UNIV · PI ROSS, MARGARET ELIZABETH · 2011 to 2020
$12.6M
INTERVENTION STRATEGIES FOR NON-FOLATE RESPONSIVE NEURAL TUBE DEFECTSR01HD083809 · NICHD · UNIVERSITY OF TEXAS AT AUSTIN · PI FINNELL, RICHARD H. · 2016 to 2024
$5.1M
Folic Acid, Parental Mutation Rates and the Risk for Neural Tube DefectsR01HD081216 · NICHD · UNIVERSITY OF TEXAS AT AUSTIN · PI FINNELL, RICHARD H., LEI, YUNPING · 2015 to 2019
$2.5M
Signaling at the primary cilium in development and diseaseR01GM113023 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI MUKHOPADHYAY, SAIKAT · 2015 to 2019
$1.4M
ACL HHS U01DD001033NCBDD CDC HHS U01 DD001033NCBDD CDC HHS U01 DD001226NICHD NIH HHS P01 HD067244NICHD NIH HHS R01 HD081216NICHD NIH HHS R01 HD083809NIGMS NIH HHS R01 GM113023
6 · The paper itself

Abstract

Spina bifida (SB) is a complex disorder of failed neural tube closure during the first month of human gestation, with a suspected etiology involving multiple gene and environmental interactions. GPR161 is a ciliary G-protein coupled receptor that regulates Sonic Hedgehog (Shh) signaling. Gpr161 null and hypomorphic mutations cause neural tube defects (NTDs) in mouse models. Herein we show that several genes involved in Shh and Wnt signaling were differentially expressed in the Gpr161 null embryos using RNA-seq analysis. To determine whether there exists an association between GPR161 and SB in humans, we performed direct Sanger sequencing on the GPR161 gene in a cohort of 384 SB patients and 190 healthy controls. We identified six rare variants of GPR161 in six SB cases, of which two of the variants were novel and did not exist in any databases. Both of these variants were predicted to be damaging by SIFT and/or PolyPhen analysis. The novel GPR161 rare variants mislocalized to the primary cilia, dysregulated Shh and Wnt signaling and inhibited cell proliferation in vitro. Our results demonstrate that GPR161 mutations cause NTDs via dysregulation of Shh and Wnt signaling in mice, and novel rare variants of GPR161 can be risk factors for SB in humans.

Indexed as

MutationAnimalsCase-Control StudiesGene Expression ProfilingGenes, DominantHedgehog ProteinsHumansInfant, NewbornMiceMice, KnockoutNeural Tube DefectsNIH 3T3 CellsPhenotypeReceptors, G-Protein-CoupledRisk FactorsSignal TransductionGPR161 protein, humanGPR162 protein, mouseHedgehog ProteinsReceptors, G-Protein-CoupledSHH protein, humanWnt Proteins

Identifiers

PMID30256984
PMCPMC6321953
OpenAlexW2893427680

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.