Evidence map›Paper›PMID 30256731›Full record

ArticleMolecular biology of the cell2018

Compressive force induces reversible chromatin condensation and cell geometry-dependent transcriptional response.

Karthik Damodaran, Saradha Venkatachalapathy, Farid Alisafaei, A V Radhakrishnan, Doorgesh Sharma Jokhun, Vivek B Shenoy, G V Shivashankar

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 163 citations in OpenAlex.

  1. Review
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  3. Review
  4. Mechanical regulation of cell memory.Nature structural & molecular biology · 2026
    Review
  5. Article
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  11. Material-Induced Nuclear Deformation Controls Chromatin Architecture in Adipose Stem Cells.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  12. Review
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54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 3 countries.

Karthik DamodaranMechanobiology Institute and Department of Biological Sciences, National University of Singapore, 117411, Singapore.
Saradha VenkatachalapathyMechanobiology Institute and Department of Biological Sciences, National University of Singapore, 117411, Singapore.
Farid AlisafaeiCenter for Engineering Mechanobiology, University of Pennsylvania, Philadelphia, PA 19104.
A V RadhakrishnanMechanobiology Institute and Department of Biological Sciences, National University of Singapore, 117411, Singapore.
Doorgesh Sharma JokhunMechanobiology Institute and Department of Biological Sciences, National University of Singapore, 117411, Singapore.
Vivek B ShenoyCenter for Engineering Mechanobiology, University of Pennsylvania, Philadelphia, PA 19104.
G V ShivashankarMechanobiology Institute and Department of Biological Sciences, National University of Singapore, 117411, Singapore.
National University of Singapore · SGUniversity of Pennsylvania · US

Funding

PSOC@Penn Education and OutreachU54CA193417 · NCI · UNIVERSITY OF PENNSYLVANIA · PI DISCHER, DENNIS E. · 2015 to 2020
$10.5M
Pathological consequences of altered tissue mechanics in fibrosisR01EB017753 · NIBIB · UNIVERSITY OF PENNSYLVANIA · PI JANMEY, PAUL A, SHENOY, VIVEK · 2014 to 2025
$6.3M
Research Supplement - Quantitative analyses of tumor cell extravasationU01CA202177 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI KAMM, ROGER D · 2015 to 2020
$4.2M
NCI NIH HHS U01 CA202177NCI NIH HHS U54 CA193417NIBIB NIH HHS R01 EB017753
6 · The paper itself

Abstract

Fibroblasts exhibit heterogeneous cell geometries in tissues and integrate both mechanical and biochemical signals in their local microenvironment to regulate genomic programs via chromatin remodelling. While in connective tissues fibroblasts experience tensile and compressive forces (CFs), the role of compressive forces in regulating cell behavior and, in particular, the impact of cell geometry in modulating transcriptional response to such extrinsic mechanical forces is unclear. Here we show that CF on geometrically well-defined mouse fibroblast cells reduces actomyosin contractility and shuttles histone deacetylase 3 (HDAC3) into the nucleus. HDAC3 then triggers an increase in the heterochromatin content by initiating removal of acetylation marks on the histone tails. This suggests that, in response to CF, fibroblasts condense their chromatin and enter into a transcriptionally less active and quiescent states as also revealed by transcriptome analysis. On removal of CF, the alteration in chromatin condensation was reversed. We also present a quantitative model linking CF-dependent changes in actomyosin contractility leading to chromatin condensation. Further, transcriptome analysis also revealed that the transcriptional response of cells to CF was geometry dependent. Collectively, our results suggest that CFs induce chromatin condensation and geometry-dependent differential transcriptional response in fibroblasts that allows maintenance of tissue homeostasis.

Indexed as

Cell ShapeChromatin Assembly and DisassemblyTranscription, GeneticActomyosinAnimalsCell NucleusChromatinCompressive StrengthEpigenesis, GeneticFibroblastsHeterochromatinHistone Deacetylase 3Histone DeacetylasesHistonesMiceMuscle ContractionActomyosinChromatinHeterochromatinHistone Deacetylase 3Histone DeacetylasesHistones

Identifiers

PMID30256731
PMCPMC6333178
OpenAlexW2893938837

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.