Evidence map›Paper›PMID 30256529›Full record

ArticleMicrobial biotechnology2018

Endophytic fungal community of Dysphania ambrosioides from two heavy metal-contaminated sites: evaluated by culture-dependent and culture-independent approaches.

Shobhika Parmar, Qiaohong Li, Ying Wu, Xinya Li, Jinping Yan, Vijay K Sharma, Yunlin Wei, Haiyan Li

Abstract read
In one paragraph

Article in Microbial biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Community Structure and Diversity of Endophytic Fungi in CultivatedJournal of fungi (Basel, Switzerland) · 2024
    Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Fungal Seed Endophyte FZT214 ImprovesFrontiers in microbiology · 2021
    Article
  11. Review
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shobhika ParmarMedical School of Kunming University of Science and Technology, Kunming, 650500, China.ORCID 0000-0002-5557-7363
Qiaohong LiThe First People's Hospital of Yunnan Province, Kunming, 650032, China.
Ying WuThe First People's Hospital of Yunnan Province, Kunming, 650032, China.
Xinya LiMedical School of Kunming University of Science and Technology, Kunming, 650500, China.
Jinping YanMedical School of Kunming University of Science and Technology, Kunming, 650500, China.
Vijay K SharmaMedical School of Kunming University of Science and Technology, Kunming, 650500, China.
Yunlin WeiMedical School of Kunming University of Science and Technology, Kunming, 650500, China.
Haiyan LiMedical School of Kunming University of Science and Technology, Kunming, 650500, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Endophytic fungal communities of Dysphania ambrosioides, a hyperaccumulator growing at two Pb-Zn-contaminated sites, were investigated through culture-dependent and culture-independent approaches. A total of 237 culturable endophytic fungi (EF) were isolated from 368 tissue (shoot and roots) segments, and the colonization rate (CR) ranged from 9.64% to 65.98%. The isolates were identified to 43 taxa based on morphological characteristics and rDNA ITS sequence analysis. Among them, 13 taxa (30.23%) were common in plant tissues from both sites; however, dominant EF were dissimilar. In culture-dependent study, 1989 OTUs were obtained through Illumina Miseq sequencing, and dominant EF were almost same in plant tissues from both sites. However, some culturable EF were not observed in total endophytic communities. We suggest that combination of both culture-dependent and culture-independent methods will provide more chances for the precise estimation of endophytic fungal community than using either of them. The tissue had more influence on the culturable fungal community structure, whereas the location had more influence on the total fungal community structure (including culturable and unculturable). Both culture-dependent and culture-independent studies illustrated that endophytic fungal communities of D. ambrosioides varied across the sites, which suggested that HM concentration of the soil may have some influence on endophytic fungal diversity.

Indexed as

AphasiaBiodiversityEndophytesFungiLeadPhylogenySoil PollutantsZincLeadSoil PollutantsZinc

Identifiers

PMID30256529
PMCPMC6196397

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.