Evidence map›Paper›PMID 30256420›Full record

ArticleThe New phytologist2019

DNA methylation dynamics during the interaction of wheat progenitor Aegilops tauschii with the obligate biotrophic fungus Blumeria graminis f. sp. tritici.

Shuaifeng Geng, Xingchen Kong, Gaoyuan Song, Meiling Jia, Jiantao Guan, Fang Wang, Zhengrui Qin, Liang Wu, Xiujin Lan, Aili Li and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
17.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 93 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. An3 Biotech · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Screening and Analysis of Antifungal StrainsJournal of fungi (Basel, Switzerland) · 2023
    Article
  14. Review
  15. Article
  16. Review
  17. Triticeae crop genome biology: an endless frontier.Frontiers in plant science · 2023
    Review
  18. Methylome changes inFrontiers in plant science · 2023
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Shuaifeng GengNational Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Xingchen KongTriticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China.
Gaoyuan SongNational Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Meiling JiaNational Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Jiantao GuanNational Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Fang WangNational Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Zhengrui QinDepartment of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
Liang WuDepartment of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
Xiujin LanTriticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China.
Aili LiNational Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.ORCID 0000-0001-9004-192X
Long MaoNational Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.ORCID 0000-0002-3377-4040
Chinese Academy of Agricultural Sciences · CNSichuan Agricultural University · CNZhejiang University · CN

Funding

National Key R&D Program for Crop Breeding of China 2016YFD0101004National Natural Science Foundation of China 31271716National Natural Science Foundation of China 31701429
6 · The paper itself

Abstract

DNA methylation is dynamically involved in plant immunity, but little information is known about its roles in plant interactions with biotrophic fungi, especially in temperate grasses such as wheat (Triticum aestivum). Using wheat diploid progenitor Aegilops tauschii accession AL8/78, the genome of which has been sequenced, we assessed the extent of DNA methylation in response to infection with Blumeria graminis f. sp. tritici (Bgt), which causes powdery mildew. Upon Bgt infection, ARGONAUTE4a (AGO4a) was significantly downregulated in A. tauschii, which was accompanied by a substantial reduction in AGO4a-sorted 24-nt siRNA levels, especially for genes near transposable elements (TAGs). Bisulfite sequencing revealed abundant differentially methylated regions (DMRs) with CHH hypomethylation. TAGs bearing CHH-hypomethylated DMRs were enriched for 'response to stress' functions, including receptor kinase, peroxidase, and pathogenesis-related genes. Virus-induced gene silencing (VIGS) of a DOMAINS REARRANGED METHYLASE 2 (DRM2) homolog enhanced plant resistance to Bgt. The effect of CHH hypomethylation was exemplified by the upregulation of a pathogenesis-related β-1,3-glucanse gene implicated in Bgt defense. These findings support the idea that dynamic DNA methylation represents a regulatory layer in the complex mechanism of plant immunity, which could be exploited to improve disease resistance in common wheat.

Indexed as

Disease ResistanceDNA MethylationAegilopsAscomycotaHost-Pathogen InteractionsPlant DiseasesPlant ProteinsTriticumPlant ProteinsAegilops tauschiiAGO4aBlumeria graminis f. sp. tritici (Bgt)DNA methylationsiRNAwheat

Identifiers

PMID30256420
PMCPMC6586159
OpenAlexW2892347571

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.