Evidence map›Paper›PMID 30255805›Full record

ArticleBMC medical informatics and decision making2018

Pharmacological risk factors associated with hospital readmission rates in a psychiatric cohort identified using prescriptome data mining.

Khader Shameer, M Mercedes Perez-Rodriguez, Roy Bachar, Li Li, Amy Johnson, Kipp W Johnson, Benjamin S Glicksberg, Milo R Smith, Ben Readhead, Joseph Scarpa and 8 more

Open access · goldAbstract read
In one paragraph

Article in BMC medical informatics and decision making, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 1 country.

Khader ShameerInstitute for Next Generation Healthcare, Mount Sinai Health System, New York, NY, USA.
M Mercedes Perez-RodriguezDepartment of Psychiatry, Mount Sinai Health System, New York, NY, USA.
Roy BacharDepartment of Psychiatry, Mount Sinai Health System, New York, NY, USA.
Li LiInstitute for Next Generation Healthcare, Mount Sinai Health System, New York, NY, USA.
Amy JohnsonDepartment of Psychiatry, Mount Sinai Health System, New York, NY, USA.
Kipp W JohnsonInstitute for Next Generation Healthcare, Mount Sinai Health System, New York, NY, USA.
Benjamin S GlicksbergInstitute for Next Generation Healthcare, Mount Sinai Health System, New York, NY, USA.
Milo R SmithInstitute for Next Generation Healthcare, Mount Sinai Health System, New York, NY, USA.
Ben ReadheadInstitute for Next Generation Healthcare, Mount Sinai Health System, New York, NY, USA.
Joseph ScarpaDepartment of Genetics and Genomic Sciences, Icahn Institute for Genomics and Multiscale Biology, New York, NY, USA.
Jebakumar JebakaranMount Sinai Data Warehouse, Mount Sinai Health System, New York, NY, USA.
Patricia KovatchMount Sinai Data Warehouse, Mount Sinai Health System, New York, NY, USA.
Sabina LimDepartment of Psychiatry, Mount Sinai Health System, New York, NY, USA.
Wayne GoodmanDepartment of Psychiatry, Mount Sinai Health System, New York, NY, USA.
David L ReichDepartment of Anesthesiology, Mount Sinai Health System, New York, NY, USA.
Andrew KasarskisDepartment of Genetics and Genomic Sciences, Icahn Institute for Genomics and Multiscale Biology, New York, NY, USA.
Nicholas P TatonettiDepartments of Biomedical Informatics, Systems Biology and Medicine, Columbia University, New York, NY, USA.
Joel T DudleyInstitute for Next Generation Healthcare, Mount Sinai Health System, New York, NY, USA. joel.dudley@mssm.edu.
Mount Sinai Health System · USColumbia University · US

Funding

MSHS Translational Science HubUL1TR001433 · NCATS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI WRIGHT, ROSALIND J · 2015 to 2019
$26.6M
MSHS Translational Science HubKL2TR001435 · NCATS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MOSKOWITZ, ALAN J · 2015 to 2019
$3.8M
Transforming Genomics with 5 PB Big Omics Data Engine Cray CS300-AC SupercomputerS10OD018522 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2014 to 2014
$1.9M
NCATS NIH HHS KL2 TR001435NCATS NIH HHS UL1 TR001433NIH HHS S10 OD018522
6 · The paper itself

Abstract

backgroundWorldwide, over 14% of individuals hospitalized for psychiatric reasons have readmissions to hospitals within 30 days after discharge. Predicting patients at risk and leveraging accelerated interventions can reduce the rates of early readmission, a negative clinical outcome (i.e., a treatment failure) that affects the quality of life of patient. To implement individualized interventions, it is necessary to predict those individuals at highest risk for 30-day readmission. In this study, our aim was to conduct a data-driven investigation to find the pharmacological factors influencing 30-day all-cause, intra- and interdepartmental readmissions after an index psychiatric admission, using the compendium of prescription data (prescriptome) from electronic medical records (EMR).

methodsThe data scientists in the project received a deidentified database from the Mount Sinai Data Warehouse, which was used to perform all analyses. Data was stored in a secured MySQL database, normalized and indexed using a unique hexadecimal identifier associated with the data for psychiatric illness visits. We used Bayesian logistic regression models to evaluate the association of prescription data with 30-day readmission risk. We constructed individual models and compiled results after adjusting for covariates, including drug exposure, age, and gender. We also performed digital comorbidity survey using EMR data combined with the estimation of shared genetic architecture using genomic annotations to disease phenotypes.

resultsUsing an automated, data-driven approach, we identified prescription medications, side effects (primary side effects), and drug-drug interaction-induced side effects (secondary side effects) associated with readmission risk in a cohort of 1275 patients using prescriptome analytics. In our study, we identified 28 drugs associated with risk for readmission among psychiatric patients. Based on prescription data, Pravastatin had the highest risk of readmission (OR = 13.10; 95% CI (2.82, 60.8)). We also identified enrichment of primary side effects (n = 4006) and secondary side effects (n = 36) induced by prescription drugs in the subset of readmitted patients (n = 89) compared to the non-readmitted subgroup (n = 1186). Digital comorbidity analyses and shared genetic analyses further reveals that cardiovascular disease and psychiatric conditions are comorbid and share functional gene modules (cardiomyopathy and anxiety disorder: shared genes (n = 37; P = 1.06815E-06)).

conclusionsLarge scale prescriptome data is now available from EMRs and accessible for analytics that could improve healthcare outcomes. Such analyses could also drive hypothesis and data-driven research. In this study, we explored the utility of prescriptome data to identify factors driving readmission in a psychiatric cohort. Converging digital health data from EMRs and systems biology investigations reveal a subset of patient populations that have significant comorbidities with cardiovascular diseases are more likely to be readmitted. Further, the genetic architecture of psychiatric illness also suggests overlap with cardiovascular diseases. In summary, assessment of medications, side effects, and drug-drug interactions in a clinical setting as well as genomic information using a data mining approach could help to find factors that could help to lower readmission rates in patients with mental illness.

Indexed as

Data MiningDrug InteractionsAdultAgedBayes TheoremCohort StudiesDatabases, FactualData WarehousingDrug-Related Side Effects and Adverse ReactionsElectronic Health RecordsFemaleHumansLogistic ModelsMaleMental DisordersMiddle AgedBig dataBiomedical informaticsComputational psychiatryDigital healthHealthcare data scienceHospital readmissionPharma informaticsPrescriptome

Identifiers

PMID30255805
PMCPMC6156906
OpenAlexW2892006582

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.