Evidence map›Paper›PMID 30255462›Full record

ArticleInternational journal of computer assisted radiology and surgery2019

GTCreator: a flexible annotation tool for image-based datasets.

Jorge Bernal, Aymeric Histace, Marc Masana, Quentin Angermann, Cristina Sánchez-Montes, Cristina Rodríguez de Miguel, Maroua Hammami, Ana García-Rodríguez, Henry Córdova, Olivier Romain and 3 more

Registry-linked trialAbstract read
PubMed Publisher
In one paragraph

Article in International journal of computer assisted radiology and surgery, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03775811 (In Vivo Computer-aided Prediction of Polyp Histology on White Light Colonoscopy), which is not on this map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03775811 completednot on this map

In Vivo Computer-aided Prediction of Polyp Histology on White Light Colonoscopy

TypeobservationalSponsorHospital Clinic of BarcelonaRan2019 to 2022Enrolled90ConditionsColonoscopy, Histology, Computer-aided Diagnosis, Artificial IntelligenceArmsAUTOMATED POLYP CLASSIFICATION
3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Annotation Tools in Gastrointestinal Polyp Annotation.Diagnostics (Basel, Switzerland) · 2022
    Review
  6. Article
  7. Article
  8. Unravelling the effect of data augmentation transformations in polyp segmentation.International journal of computer assisted radiology and surgery · 2020
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Jorge BernalComputer Vision Center and Universitat Autonòma de Barcelona, Barcelona, Spain. jorge.bernal@cvc.uab.cat.ORCID http://orcid.org/0000-0001-8493-9514
Aymeric HistaceETIS lab, ENSEA, CNRS, University of Cergy-Pontoise, Cergy, France.ORCID http://orcid.org/0000-0002-3029-4412
Marc MasanaComputer Vision Center and Universitat Autonòma de Barcelona, Barcelona, Spain.ORCID http://orcid.org/0000-0003-3254-3096
Quentin AngermannETIS lab, ENSEA, CNRS, University of Cergy-Pontoise, Cergy, France.
Cristina Sánchez-MontesEndoscopy Unit, ICMDiM, Hospital Clnic, IDIBAPS, CIBEREHD, University of Barcelona, Barcelona, Spain.ORCID http://orcid.org/0000-0002-7050-3995
Cristina Rodríguez de MiguelEndoscopy Unit, ICMDiM, Hospital Clnic, IDIBAPS, CIBEREHD, University of Barcelona, Barcelona, Spain.ORCID http://orcid.org/0000-0002-5576-0854
Maroua HammamiETIS lab, ENSEA, CNRS, University of Cergy-Pontoise, Cergy, France.ORCID http://orcid.org/0000-0002-4303-5970
Ana García-RodríguezEndoscopy Unit, ICMDiM, Hospital Clnic, IDIBAPS, CIBEREHD, University of Barcelona, Barcelona, Spain.ORCID http://orcid.org/0000-0001-7637-922X
Henry CórdovaEndoscopy Unit, ICMDiM, Hospital Clnic, IDIBAPS, CIBEREHD, University of Barcelona, Barcelona, Spain.ORCID http://orcid.org/0000-0002-6636-6764
Olivier RomainETIS lab, ENSEA, CNRS, University of Cergy-Pontoise, Cergy, France.ORCID http://orcid.org/0000-0002-2172-1865
Gloria Fernández-EsparrachEndoscopy Unit, ICMDiM, Hospital Clnic, IDIBAPS, CIBEREHD, University of Barcelona, Barcelona, Spain.ORCID http://orcid.org/0000-0002-3378-3940
Xavier DrayETIS lab, ENSEA, CNRS, University of Cergy-Pontoise, Cergy, France.ORCID http://orcid.org/0000-0002-4527-203X
F Javier SánchezComputer Vision Center and Universitat Autonòma de Barcelona, Barcelona, Spain.ORCID http://orcid.org/0000-0002-9364-3122

Funding

READER ACCURACY WITH VIDEO DISPLAY OF MAMMOGRAMSR21CA079717 · NCI · WAKE FOREST UNIVERSITY · PI CARR, JOHN JEFFREY · 1999 to 2000
$142k
Instituto de Salud Carlos III PI17/00894Ministerio de Ciencia e Innovación DPI2015- 65286-RMinisterio de Ciencia e Innovación TIN2016-79717-R
6 · The paper itself

Abstract

purposeMethodology evaluation for decision support systems for health is a time-consuming task. To assess performance of polyp detection methods in colonoscopy videos, clinicians have to deal with the annotation of thousands of images. Current existing tools could be improved in terms of flexibility and ease of use.

methodsWe introduce GTCreator, a flexible annotation tool for providing image and text annotations to image-based datasets. It keeps the main basic functionalities of other similar tools while extending other capabilities such as allowing multiple annotators to work simultaneously on the same task or enhanced dataset browsing and easy annotation transfer aiming to speed up annotation processes in large datasets.

resultsThe comparison with other similar tools shows that GTCreator allows to obtain fast and precise annotation of image datasets, being the only one which offers full annotation editing and browsing capabilites.

conclusionOur proposed annotation tool has been proven to be efficient for large image dataset annotation, as well as showing potential of use in other stages of method evaluation such as experimental setup or results analysis.

Indexed as

Datasets as TopicSoftwareColonoscopyData CurationHumansImage Processing, Computer-AssistedIntestinal PolypsAnnotation toolBenchmarkColonoscopyEvaluationValidation framework

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.