Evidence map›Paper›PMID 30255452›Full record

ArticleBreast cancer research and treatment2019

A synonymous germline variant PALB2 c.18G>T (p.Gly6=) disrupts normal splicing in a family with pancreatic and breast cancers.

Ciyu Yang, Ozge Ceyhan-Birsoy, Diana Mandelker, Sowmya Jairam, Amanda Catchings, Eileen M O'Reilly, Michael F Walsh, Liying Zhang

Open access · greenAbstract read
In one paragraph

Article in Breast cancer research and treatment, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Ciyu YangDepartments of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Ozge Ceyhan-BirsoyDepartments of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Diana MandelkerDepartments of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Sowmya JairamDepartments of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Amanda CatchingsDepartments of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Eileen M O'ReillyDepartments of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Michael F WalshDepartments of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Liying ZhangDepartments of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA. zhangl2@mskcc.org.ORCID http://orcid.org/0000-0003-4517-0751
Memorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Memorial Sloan-Kettering Cancer Center N/ANCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

purposeMutations in PALB2 have been associated with a predisposition to breast and pancreatic cancers. This study aims to characterize a novel PALB2 synonymous variant c.18G>T (p.Gly6=) identified in a family with pancreatic and breast cancers.

methodsThe PALB2 c.18G>T (p.Gly6=) variant in this family was identified using Memorial Sloan Kettering-Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT™). RT-PCR and subsequent cloning were performed to investigate whether this variant affects normal splicing.

resultsThis variant completely disrupts normal splicing and leads to several abnormal transcripts, which presumably leads to premature protein truncation. The major abnormal transcript resulted in a deletion of 32 base pairs in exon 1 and frameshift.

conclusionsOur results indicate that the PALB2 c.18G>T (p.Gly6=) variant is likely pathogenic. This study provided important laboratory evidence for classification of this variant and guided improved patient management.

Indexed as

Protein IsoformsAdultBreast NeoplasmsExonsFanconi Anemia Complementation Group N ProteinFemaleGenetic Predisposition to DiseaseGerm-Line MutationHumansMaleMiddle AgedOvarian NeoplasmsPancreatic NeoplasmsPedigreeFanconi Anemia Complementation Group N ProteinPALB2 protein, humanProtein IsoformsPALB2SplicingSynonymous germline variant

Identifiers

PMID30255452
PMCPMC6785047
OpenAlexW2893431377

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.