Evidence map›Paper›PMID 30254761›Full record

Trial reportPulmonary medicine2018

Sequencing Alpha-1 MZ Individuals Shows Frequent Biallelic Mutations.

Kimberly E Foil, M Gwen Blanton, Chris Sanders, Joannah Kim, Haitham S Al Ashry, Suchit Kumbhare, Charlie Strange

Registry-linked trialOpen access · goldAbstract readClinical Trial
In one paragraph

Trial report in Pulmonary medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02810327 (Alpha-1 Carrier Genomics Study), which is not on this map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02810327 completednot on this map

Alpha-1 Carrier Genomics Study

TypeobservationalSponsorMedical University of South CarolinaRan2015 to 2017Enrolled117ConditionsAlpha-1 Antitrypsin Deficiency, Emphysema, COPD, SmokingArmsGenetic Sequencing
3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Variants ofTherapeutic advances in chronic disease · 2021
    Review
  7. Article
  8. The Effects of RareAmerican journal of respiratory and critical care medicine · 2020
    Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Kimberly E FoilDivision of Pulmonary, Critical Care, Allergy and Sleep Medicine, Medical University of South Carolina, Charleston, SC, USA.ORCID 0000-0001-7926-2297
M Gwen BlantonDivision of Pulmonary, Critical Care, Allergy and Sleep Medicine, Medical University of South Carolina, Charleston, SC, USA.ORCID 0000-0002-4614-1939
Chris SandersBiocerna LLC, Gaithersburg, MD, USA.
Joannah KimBiocerna LLC, Gaithersburg, MD, USA.
Haitham S Al AshryDivision of Pulmonary, Critical Care, Allergy and Sleep Medicine, Medical University of South Carolina, Charleston, SC, USA.
Suchit KumbhareDivision of Pulmonary, Critical Care, Allergy and Sleep Medicine, Medical University of South Carolina, Charleston, SC, USA.
Charlie StrangeDivision of Pulmonary, Critical Care, Allergy and Sleep Medicine, Medical University of South Carolina, Charleston, SC, USA.ORCID 0000-0002-8109-8067
Medical University of South Carolina · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

rationaleIndividuals with a single Z mutation in the

objectivesTo determine whether additional

methodsIndividuals with prior MZ results and AAT serum level <16uM were recruited from the Alpha-1 Coded Testing study and Alpha-1 Foundation Research Registry. Participants completed smoking history, demographics, and COPD Severity Score (Range 0-33) using REDCap data capture. At-home finger-stick tests were performed for next generation sequencing (NGS) at the Biocerna LLC laboratory. A genetic counselor reviewed records and interviewed participants with additional variants by NGS. A Wilcoxon Rank Sum test was used to assess correlation between variants and the COPD severity score.

resultsA second

conclusionsSome diagnosed MZ individuals instead have biallelic variants. Larger studies are needed to determine COPD-risk liability of variants. Accurate diagnosis impacts medical management and familial risk assessment. Pi phenotyping can be confounded by augmentation therapy and liver transplantation. Because a normal M allele may be reported in the absence of tested mutation(s) in AATD genotyping, clinicians should consider clinical circumstances and laboratory methods when selecting and interpreting AATD tests. Advanced testing, including NGS, may be beneficial for select individuals with prior MZ results. CLINICAL

trial registrationThis study was registered with clinicaltrials.gov (NCT NCT02810327).

Indexed as

AdolescentAdultAgedalpha 1-AntitrypsinFemaleGenotypeHumansMaleMiddle AgedMutationPulmonary Disease, Chronic ObstructiveRisk Factorsalpha 1-AntitrypsinSERPINA1 protein, human

Identifiers

PMID30254761
PMCPMC6145046
OpenAlexW2891447329

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.