Evidence map›Paper›PMID 30254541›Full record

ArticleJournal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience2018

The Allen Brain Atlas as a Resource for Teaching Undergraduate Neuroscience.

Terri L Gilbert

Abstract read
In one paragraph

Article in Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Mapping Human Neuronal Diversity in the Search for New Therapeutics: Using Real Human Neuron Data Sets to Build Student Quantitative Skills.Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience · 2023
    Article
  6. Introducing immunohistochemistry to the molecular biology laboratory.Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology · 2022
    Article
  7. Review
  8. Generative Models of Brain Dynamics.Frontiers in artificial intelligence · 2022
    Review
  9. An Introduction to the Proceedings of the 2020 FUN Summer Virtual Meeting.Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience · 2022
    Article
  10. Enhancing Student Research Experiences with Open Data from the Allen Brain Map.Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience · 2022
    Article
  11. Lessons Learned in Developing Virtual Neuroscience Labs.Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience · 2022
    Article
  12. Pandemic Teaching: Using the Allen Cell Types Database for Final Semester Projects in an Undergraduate Neurophysiology Lab Course.Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience · 2021
    Article
  13. A Course-Based Research Experience Using the Allen Brain Map: From Research Question to Poster Session.Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience · 2021
    Article
  14. Article
  15. Learning How to Code While Analyzing an Open Access Electrophysiology Dataset.Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience · 2020
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Terri L GilbertGilHou Science Communication, Seattle, WA, 98106.

Funding

Transcriptional Atlas of Human Brain DevelopmentRC2MH089921 · NIMH · ALLEN INSTITUTE · PI FISCHL, BRUCE, GESCHWIND, DANIEL H · 2009 to 2010
$16.2M
Transcriptional Atlas of Human Brain DevelopmentRC2MH089929 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2009 to 2010
$9.9M
Transcriptional Atlas of Human Brain DevelopmentRC2MH090047 · NIMH · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KNOWLES, JAMES A, LEVITT, PAT · 2009 to 2010
$8.9M
NIMH NIH HHS RC2 MH089921NIMH NIH HHS RC2 MH089929NIMH NIH HHS RC2 MH090047
6 · The paper itself

Abstract

The open science movement has resulted in a growing field of data- and tool-sharing platforms that serve as a resource not only for sharing data and results in the field of brain science but has allowed students and researchers to learn neuroscientific skills and concepts. For over a decade, the Allen Institute for Brain Science has been meticulously collecting high quality data mapping gene expression, connectivity and, more recently, functional data from the brains of mice, macaques and humans. These open data have been paired with unique navigation and visualization tools such that the neuroscience researcher can explore, utilize and even incorporate these data into their publications. The tools created to explore and analyze the Allen Brain Atlas datasets have also been widely utilized to teach neuroscientific concepts to undergraduate and graduate students. This article aims to outline how to use the Allen Brain Atlas resources as teaching tools to impart neuroanatomic concepts to undergraduate and graduate neuroscience students.

Indexed as

Allen Brain AtlasAllen Mouse Brain AtlasGene ExpressionIn Situ Hybridization (ISH)

Identifiers

PMID30254541
PMCPMC6153011

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.