Evidence map›Paper›PMID 30254245›Full record

ArticleNature communications2018

Loss of PRC1 induces higher-order opening of Hox loci independently of transcription during Drosophila embryogenesis.

Thierry Cheutin, Giacomo Cavalli

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 62 citations in OpenAlex.

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  15. Epigenetics · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Thierry CheutinInstitute of Human Genetics, CNRS and the University of Montpellier, Montpellier, France. thierry.cheutin@igh.cnrs.fr.
Giacomo CavalliInstitute of Human Genetics, CNRS and the University of Montpellier, Montpellier, France. giacomo.cavalli@igh.cnrs.fr.ORCID http://orcid.org/0000-0003-3709-3469
Centre National de la Recherche Scientifique · FR

Funding

Therapeutic peptide for hepatocellular carcinomaR43CA232947 · NCI · ASCLEPIX THERAPEUTICS, INC. · PI PANDEY, NIRANJAN B · 2018 to 2018
$300k
Agence Nationale de la Recherche (French National Research Agency) ANR-10-LABX-12-01Agence Nationale de la Recherche (French National Research Agency) ANR-15-CE12-006-01EC | European Research Council (ERC) ERC-2008-AdG No 232947EC | Horizon 2020 (European Union Framework Programme for Research and Innovation) 676556EC | Seventh Framework Programme (European Union Seventh Framework Programme) EpiGeneSysEuropean Research Council 232947Fondation pour la Recherche Médicale (Foundation for Medical Research in France) CT 140209Institut National Du Cancer (French National Cancer Institute) PLBIO16-222
6 · The paper itself

Abstract

Polycomb-group proteins are conserved chromatin factors that maintain the silencing of key developmental genes, notably the Hox gene clusters, outside of their expression domains. Depletion of Polycomb repressive complex 1 (PRC1) proteins typically results in chromatin unfolding, as well as ectopic transcription. To disentangle these two phenomena, here we analyze the temporal function of two PRC1 proteins, Polyhomeotic (Ph) and Polycomb (Pc), on Hox gene clusters during Drosophila embryogenesis. We show that the absence of Ph or Pc affects the higher-order chromatin folding of Hox clusters prior to ectopic Hox gene transcription, demonstrating that PRC1 primary function during early embryogenesis is to compact its target chromatin. Moreover, the differential effects of Ph and Pc on Hox cluster folding match the differences in ectopic Hox gene expression observed in these two mutants. Our data suggest that PRC1 maintains gene silencing by folding chromatin domains and impose architectural layer to gene regulation.

Indexed as

Transcription, GeneticAnimalsAnimals, Genetically ModifiedChromatinDNA-Binding ProteinsDrosophilaDrosophila ProteinsEmbryo, NonmammalianGene Expression Regulation, DevelopmentalHomeodomain ProteinsIn Situ Hybridization, FluorescenceMicroscopy, ConfocalMutationPolycomb Repressive Complex 1ChromatinDNA-Binding ProteinsDrosophila ProteinsHomeodomain ProteinsPc protein, Drosophilaph-d protein, DrosophilaPolycomb Repressive Complex 1

Identifiers

PMID30254245
PMCPMC6156336
OpenAlexW2891043781

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.