Evidence map›Paper›PMID 30251991›Full record

ArticleScientific data2018

De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments.

Qing-Sheng Li, Xu-Min Li, Ru-Ying Qiao, En-Hui Shen, Xiao-Ming Lin, Jian-Liang Lu, Jian-Hui Ye, Yue-Rong Liang, Xin-Qiang Zheng

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Qing-Sheng LiTea Research Institute, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
Xu-Min LiTea Research Institute, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
Ru-Ying QiaoTea Department, Wuzhou University, Wuzhou, 543000, China.
En-Hui ShenInstitute of Crop Science & Institute of Bioinformatics, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
Xiao-Ming LinTea Research Institute, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
Jian-Liang LuTea Research Institute, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
Jian-Hui YeTea Research Institute, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
Yue-Rong LiangTea Research Institute, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
Xin-Qiang ZhengTea Research Institute, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
Tea Research Institute · CNZhejiang University · CNWuzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tea plant (Camellia sinensis) is a typical fluoride (F) hyperaccumulator enriching most F in old leaves. There is association between the risk of fluorosis and excessive consumption of teas prepared using the old leaves. It is meaningful to develop methods for controlling F levels in tea leaves. We generated a comprehensive RNA-seq dataset from tea plants grown at various F levels for different durations by hydroponics, aiming at providing information on mechanism of F metabolism in tea plant. Besides raw reads of the RNA-seq dataset, we present assembled unigenes and aligned unigenes with annotations versus the Gene Ontology (GO) databases, Kyoto Encyclopaedia of Genes and Genomes (KEGG) databases, and Nonredundant (Nr) protein databases with low e-values. 69,488 unigenes were obtained in total, in which 40,894 were given Nr annotations.

Indexed as

RNA, PlantSequence Analysis, RNATranscriptomeCamellia sinensisFluoridesFluorineFluoridesFluorineRNA, Plant

Identifiers

PMID30251991
PMCPMC6154286
OpenAlexW2893047374

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.