Evidence map›Paper›PMID 30250786›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2018

Origin, Genetic Diversity, and Evolutionary Dynamics of Novel Porcine Circovirus 3.

Gairu Li, Wanting He, Henan Zhu, Yuhai Bi, Ruyi Wang, Gang Xing, Cheng Zhang, Jiyong Zhou, Kwok-Yung Yuen, George F Gao and 1 more

Abstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed.

  1. Article
  2. Article
  3. Construction andMicrobiology spectrum · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Gairu LiMOE International Joint Collaborative Research Laboratory for Animal Health & Food Safety Jiangsu Engineering Laboratory of Animal Immunology Institute of Immunology College of Veterinary Medicine Nanjing Agricultural University Tongwei Road, Xuanwu District Nanjing 210095 China.
Wanting HeMOE International Joint Collaborative Research Laboratory for Animal Health & Food Safety Jiangsu Engineering Laboratory of Animal Immunology Institute of Immunology College of Veterinary Medicine Nanjing Agricultural University Tongwei Road, Xuanwu District Nanjing 210095 China.
Henan ZhuMRC-University of Glasgow Centre for Virus Research 464 Bearsden Road Glasgow G61 1QH UK.
Yuhai BiCAS Key Laboratory of Pathogenic Microbiology and Immunology Institute of Microbiology Chinese Academy of Sciences NO.1 Beichen West Road, Chaoyang District Beijing 100101 China.
Ruyi WangMOE International Joint Collaborative Research Laboratory for Animal Health & Food Safety Jiangsu Engineering Laboratory of Animal Immunology Institute of Immunology College of Veterinary Medicine Nanjing Agricultural University Tongwei Road, Xuanwu District Nanjing 210095 China.
Gang XingMOE International Joint Collaborative Research Laboratory for Animal Health & Food Safety Jiangsu Engineering Laboratory of Animal Immunology Institute of Immunology College of Veterinary Medicine Nanjing Agricultural University Tongwei Road, Xuanwu District Nanjing 210095 China.
Cheng ZhangMOE International Joint Collaborative Research Laboratory for Animal Health & Food Safety Jiangsu Engineering Laboratory of Animal Immunology Institute of Immunology College of Veterinary Medicine Nanjing Agricultural University Tongwei Road, Xuanwu District Nanjing 210095 China.
Jiyong ZhouMOE International Joint Collaborative Research Laboratory for Animal Health & Food Safety Jiangsu Engineering Laboratory of Animal Immunology Institute of Immunology College of Veterinary Medicine Nanjing Agricultural University Tongwei Road, Xuanwu District Nanjing 210095 China.
Kwok-Yung YuenDepartment of Microbiology Queen Mary Hospital Hong Kong 999077 China.
George F GaoCAS Key Laboratory of Pathogenic Microbiology and Immunology Institute of Microbiology Chinese Academy of Sciences NO.1 Beichen West Road, Chaoyang District Beijing 100101 China.
Shuo SuMOE International Joint Collaborative Research Laboratory for Animal Health & Food Safety Jiangsu Engineering Laboratory of Animal Immunology Institute of Immunology College of Veterinary Medicine Nanjing Agricultural University Tongwei Road, Xuanwu District Nanjing 210095 China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porcine circovirus 3 (PCV3) is a novel virus associated with acute PDNS (porcine dermatitis and nephropathy syndrome)-like clinical signs identified by metagenomic sequencing from swine. Its high occurrence may pose a potential threat to the swine industry worldwide. The processes resulting in the emergence and spread of PCV3 remain poorly understood. Herein, the possible origin, genotypes, and evolutionary dynamics of PCV3 based on available genomic sequences are determined. The closest ancestor of PCV3 is found to be within the clade 1 bat CVs. Using different phylogenetic methods, two major genotypes are identified, PCV3a and PCV3b. It is found that the effective population size of PCV3 increased rapidly during late 2013 to early 2014 and this is associated with the diversification of PCV3a and PCV3b. A relatively high effective reproductive number (Re) value and higher evolutionary rate were found compared to other single-stranded DNA viruses, and positive selection on codons 122 and 320 (24 of ORF2) is identified. It is hypothesized that this, together with the prediction of a potential change of an antigenic epitope at position 320, might have allowed PCV3 to escape from the host immune response. Overall, this study has important implications for understanding the ongoing PCV3 cases worldwide and will guide future efforts to develop effective preventive and control measures.

Indexed as

bat circovirusevolutiongenotypesphylodynamicphylogenetic analysisporcine circovirus 3 (PCV3)swine

Identifiers

PMID30250786
PMCPMC6145280

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.