Evidence map›Paper›PMID 30249771›Full record

ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2018

Tissue self-organization underlies morphogenesis of the notochord.

James Norman, Emma L Sorrell, Yi Hu, Vaishnavi Siripurapu, Jamie Garcia, Jennifer Bagwell, Patrick Charbonneau, Sharon R Lubkin, Michel Bagnat

Open access · bronzeAbstract read
In one paragraph

Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Morphogenetic Roles of Hydrostatic Pressure in Animal Development.Annual review of cell and developmental biology · 2022
    Review
  9. Zebrafish: an important model for understanding scoliosis.Cellular and molecular life sciences : CMLS · 2022
    Review
  10. Article
  11. Development of a straight vertebrate body axis.Development (Cambridge, England) · 2020
    Review
  12. Article
  13. Review
  14. Mechanics of development.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

James NormanDepartment of Cell Biology, Duke University, Durham, NC 27710, USA.
Emma L SorrellDepartment of Cell Biology, Duke University, Durham, NC 27710, USA.
Yi HuDepartment of Chemistry, Duke University, Durham, NC 27710, USA.
Vaishnavi SiripurapuDepartment of Cell Biology, Duke University, Durham, NC 27710, USA.
Jamie GarciaDepartment of Cell Biology, Duke University, Durham, NC 27710, USA.
Jennifer BagwellDepartment of Cell Biology, Duke University, Durham, NC 27710, USA.
Patrick CharbonneauDepartment of Chemistry, Duke University, Durham, NC 27710, USA.
Sharon R LubkinDepartment of Mathematics, North Carolina State University, Raleigh, NC 27695-8205, USA.ORCID 0000-0003-2521-0699
Michel BagnatDepartment of Cell Biology, Duke University, Durham, NC 27710, USA m.bagnat@cellbio.duke.edu.ORCID 0000-0002-3829-0168
Duke University · USNorth Carolina State University · US

Funding

Uncovering mechanisms controlling notochord vacuole and spine morphogenesisR01AR065439 · NIAMS · DUKE UNIVERSITY · PI BAGNAT, MICHEL · 2013 to 2017
$1.7M
Lightsheet Imaging SystemS10OD020010 · OD · DUKE UNIVERSITY · PI CAMERON, LISA A. · 2016 to 2016
$597k
Mechanisms protecting cell surface integrity in giant vacuolated cells of the notochordF31GM122422 · NIGMS · DUKE UNIVERSITY · PI GARCIA, JAMIE NICOLE · 2017 to 2019
$116k
Howard Hughes Medical InstituteNIAMS NIH HHS R01 AR065439NIGMS NIH HHS F31 GM122422NIH HHS S10 OD020010
6 · The paper itself

Abstract

The notochord is a conserved axial structure that in vertebrates serves as a hydrostatic scaffold for embryonic axis elongation and, later on, for proper spine assembly. It consists of a core of large fluid-filled vacuolated cells surrounded by an epithelial sheath that is encased in extracellular matrix. During morphogenesis, the vacuolated cells inflate their vacuole and arrange in a stereotypical staircase pattern. We investigated the origin of this pattern and found that it can be achieved purely by simple physical principles. We are able to model the arrangement of vacuolated cells within the zebrafish notochord using a physical model composed of silicone tubes and water-absorbing polymer beads. The biological structure and the physical model can be accurately described by the theory developed for the packing of spheres and foams in cylinders. Our experiments with physical models and numerical simulations generated several predictions on key features of notochord organization that we documented and tested experimentally in zebrafish. Altogether, our data reveal that the organization of the vertebrate notochord is governed by the density of the osmotically swelling vacuolated cells and the aspect ratio of the notochord rod. We therefore conclude that self-organization underlies morphogenesis of the vertebrate notochord.This article is part of the Theo Murphy meeting issue on 'Mechanics of development'.

Indexed as

Embryonic DevelopmentAnimalsCell CountModels, BiologicalMorphogenesisNotochordZebrafishnotochordpackingself-organizationvacuolated cellszebrafish

Identifiers

PMID30249771
PMCPMC6158209
OpenAlexW2893050486

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.