Evidence map›Paper›PMID 30249606›Full record

ArticleThe Biochemical journal2018

Inhibitor potency varies widely among tumor-relevant human isocitrate dehydrogenase 1 mutants.

Diego Avellaneda Matteo, Grace A Wells, Lucas A Luna, Adam J Grunseth, Olga Zagnitko, David A Scott, An Hoang, Amit Luthra, Manal A Swairjo, Jamie M Schiffer and 1 more

Abstract read
In one paragraph

Article in The Biochemical journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. 2-Hydroxyglutarate in Cancer Cells.Antioxidants & redox signaling · 2020
    Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Diego Avellaneda MatteoDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA, U.S.A.
Grace A WellsDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA, U.S.A.
Lucas A LunaDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA, U.S.A.
Adam J GrunsethDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA, U.S.A.
Olga ZagnitkoSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, U.S.A.
David A ScottSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, U.S.A.
An HoangDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA, U.S.A.
Amit LuthraDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA, U.S.A.
Manal A SwairjoDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA, U.S.A.ORCID 0000-0003-1334-1763
Jamie M SchifferSchrödinger, La Jolla, CA, U.S.A. jamie.schiffer@schrodinger.com csohl@sdsu.edu.
Christal D SohlDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA, U.S.A. jamie.schiffer@schrodinger.com csohl@sdsu.edu.ORCID 0000-0002-8048-0205

Funding

Tumor Microenvironment and Cancer ImmunologyP30CA030199 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI ELENA B PASQUALE · 1985 to 2026
$107.2M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Research Education CoreU54CA132384 · NCI · SAN DIEGO STATE UNIVERSITY · PI CRIPPS, RICHARD MATTHEW, CROWE, SHEILA E. · 2008 to 2022
$20.7M
Research Education CoreU54CA132379 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ARREDONDO, ELVA M, CROWE, SHEILA E. · 2008 to 2021
$16.1M
RNA modification: Structure and MechanismR01GM110588 · NIGMS · WESTERN UNIVERSITY OF HEALTH SCIENCES · PI SWAIRJO, MANAL A · 2014 to 2024
$3.9M
The molecular mechanism of isocitrate dehydrogenase (lDH) mutations in cancerR00CA187594 · NCI · SAN DIEGO STATE UNIVERSITY · PI SOHL, CHRISTAL DYANE · 2015 to 2017
$693k
NCI NIH HHS P30 CA030199NCI NIH HHS R00 CA187594NCI NIH HHS U54 CA132379NCI NIH HHS U54 CA132384NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM110588
6 · The paper itself

Abstract

Mutations in isocitrate dehydrogenase 1 (IDH1) drive most low-grade gliomas and secondary glioblastomas and many chondrosarcomas and acute myeloid leukemia cases. Most tumor-relevant IDH1 mutations are deficient in the normal oxidization of isocitrate to α-ketoglutarate (αKG), but gain the neomorphic activity of reducing αKG to D-2-hydroxyglutarate (D2HG), which drives tumorigenesis. We found previously that IDH1 mutants exhibit one of two reactivities: deficient αKG and moderate D2HG production (including commonly observed R132H and R132C) or moderate αKG and high D2HG production (R132Q). Here, we identify a third type of reactivity, deficient αKG and high D2HG production (R132L). We show that R132Q IDH1 has unique structural features and distinct reactivities towards mutant IDH1 inhibitors. Biochemical and cell-based assays demonstrate that while most tumor-relevant mutations were effectively inhibited by mutant IDH1 inhibitors, R132Q IDH1 had up to a 16 300-fold increase in IC

Indexed as

Binding SitesCarcinogenesisHEK293 CellsHeLa CellsHumansIsocitrate DehydrogenaseMutationProtein Structure, SecondaryProtein Structure, TertiaryIDH1 protein, humanIsocitrate Dehydrogenasecancer metabolismenzyme inhibitorenzyme kineticsenzyme mutationIDH1molecular dynamics

Identifiers

PMID30249606
PMCPMC6422176

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.