ArticleBMC plant biology2018
Evolutionary insights from comparative transcriptome and transcriptome-wide coalescence analyses in Tetrastigma hemsleyanum.
Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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Who cites it
6 citing papers in PubMed.
- Nuclear phylogeny of Malus with increased sampling provides new insights into biogeography and character evolution.BMC plant biology · 2025Article
- Using landscape genomics to assess local adaptation and genomic vulnerability of a perennial herbFrontiers in genetics · 2023Article
- Article
- Adaptation insights from comparative transcriptome analysis of two Opisthopappus species in the Taihang mountains.BMC genomics · 2022Article
- Seasonal Variation in Transcriptomic Profiling ofFrontiers in plant science · 2021Article
- Complete chloroplast genome sequence and phylogenetic analysis of wasabi (Eutrema japonicum) and its relatives.Scientific reports · 2019Article
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Authors and funding
8 authors.
Funding
Abstract
backgroundTetrastigma hemsleyanum is of great medicinal importance and used as a model system to address the evolutionary history of warm-temperate evergreen (WTE) forest biomes in East Asia over Neogene time scales. However, further studies on the neutral and adaptive divergence processes of T. hemsleyanum are currently impeded by a lack of genomic resources. In this study, we de novo assembled and annotated a reference transcriptome for two cpDNA lineages (Central-South-East vs. Southwest) of T. hemsleyanum. We further used comparative genomic and multilocus coalescent approaches to investigate the tempo and mode of lineage diversification in T. hemsleyanum.
resultsA total of 52,838 and 65,197 unigenes with an N50 of 1,667 and 1,841 bp for Central-South-East (CSE) and Southwest (SW) lineages, respectively, were recovered, and 6,692 putative orthologs were identified between the two lineages. Estimation of K
conclusionsThis study demonstrated the utility of transcriptome sequencing as a basis for SCNG development in non-model species and the advantages of integrating multiple nuclear loci for phylogeographic and phylogenetic studies.
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