Evidence map›Paper›PMID 30249184›Full record

ArticleBMC microbiology2018

Characterization of the bacterial communities on recent Icelandic volcanic deposits of different ages.

Bo Byloos, Pieter Monsieurs, Mohamed Mysara, Natalie Leys, Nico Boon, Rob Van Houdt

Abstract read
In one paragraph

Article in BMC microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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  12. Trees as net sinks for methane (CHThe New phytologist · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Bo ByloosMicrobiology Unit, Interdisciplinary Biosciences, Belgian Nuclear Research Centre, SCK•CEN, Boeretang 200, B-2400, Mol, Belgium.
Pieter MonsieursMicrobiology Unit, Interdisciplinary Biosciences, Belgian Nuclear Research Centre, SCK•CEN, Boeretang 200, B-2400, Mol, Belgium.
Mohamed MysaraMicrobiology Unit, Interdisciplinary Biosciences, Belgian Nuclear Research Centre, SCK•CEN, Boeretang 200, B-2400, Mol, Belgium.
Natalie LeysMicrobiology Unit, Interdisciplinary Biosciences, Belgian Nuclear Research Centre, SCK•CEN, Boeretang 200, B-2400, Mol, Belgium.
Nico BoonCenter for Microbial Ecology & Technology (CMET), Ghent University, Ghent, Belgium.
Rob Van HoudtMicrobiology Unit, Interdisciplinary Biosciences, Belgian Nuclear Research Centre, SCK•CEN, Boeretang 200, B-2400, Mol, Belgium. rvhoudto@sckcen.be.ORCID 0000-0002-7459-496X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBasalt is the most common igneous rock on the Earth's surface covering. Basalt-associated microorganisms drive the cycling and sequestration of different elements such as nitrogen, carbon and other nutrients, which facilitate subsequent pioneer and plant development, impacting long-term regulation of the Earth's temperature and biosphere. The initial processes of colonization and subsequent rock weathering by microbial communities are still poorly understood and relatively few data are available on the diversity and richness of the communities inhabiting successive and chronological lava flows. In this study, the bacterial communities present on lava deposits from different eruptions of the 1975-84 Krafla Fires (32-, 35- and 39-year old, respectively) at the Krafla, Iceland, were determined.

resultsThree sites were sampled for each deposit (32-, 35- and 39-year old), two proximal sites (at 10 m distance) and one more distant site (at 100 m from the two other sites). The determined chemical composition and metal concentrations were similar for the three basalt deposits. No significant differences were observed in the total number of cells in each flow. 16S rRNA gene amplicon sequencing showed that the most abundant classified phylum across the 3 flows was Proteobacteria, although predominance of Acidobacteria, Actinobacteria and Firmicutes was observed for some sampling sites. In addition, a considerable fraction of the operational taxonomic units remained unclassified. Alpha diversity (Shannon, inverse Simpson and Chao), HOMOVA and AMOVA only showed a significant difference for Shannon between the 32- and 39-year old flow (p < 0.05). Nonmetric multidimensional scaling (NMDS) analysis showed that age significantly (p = 0.026) influenced the leftward movement along NMDS axis 1.

conclusionsAlthough NMDS indicated that the (relatively small) age difference of the deposits appeared to impact the bacterial community, this analysis was not consistent with AMOVA and HOMOVA, indicating no significant difference in community structure. The combined results drive us to conclude that the (relatively small) age differences of the deposits do not appear to be the main factor shaping the microbial communities. Probably other factors such as spatial heterogeneity, associated carbon content, exogenous rain precipitations and wind also affect the diversity and dynamics.

Indexed as

Soil MicrobiologyBacteriaBiodiversityCarbonDNA, BacterialIcelandNitrogenPhylogenyRNA, Ribosomal, 16SVolcanic EruptionsCarbonDNA, BacterialNitrogenRNA, Ribosomal, 16S16S rRNA gene amplicon sequencingBacterial communitiesBasaltChronosequenceIcelandKraflaLava

Identifiers

PMID30249184
PMCPMC6154810

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.