Evidence map›Paper›PMID 30249182›Full record

ArticleBMC genomics2018

Rhodoliths holobionts in a changing ocean: host-microbes interactions mediate coralline algae resilience under ocean acidification.

Giselle S Cavalcanti, Priya Shukla, Megan Morris, Bárbara Ribeiro, Mariah Foley, Michael P Doane, Cristiane C Thompson, Matthew S Edwards, Elizabeth A Dinsdale, Fabiano L Thompson

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 51 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Giselle S CavalcantiBiology Institute, Federal University of Rio de Janeiro (UFRJ), Rio de Janeiro, RJ, 21941-599, Brazil. gscanti@gmail.com.
Priya ShuklaDepartment of Biology, San Diego State University, San Diego, CA, 92182, USA.
Megan MorrisDepartment of Biology, San Diego State University, San Diego, CA, 92182, USA.
Bárbara RibeiroBiology Institute, Federal University of Rio de Janeiro (UFRJ), Rio de Janeiro, RJ, 21941-599, Brazil.
Mariah FoleyDepartment of Biology, San Diego State University, San Diego, CA, 92182, USA.
Michael P DoaneDepartment of Biology, San Diego State University, San Diego, CA, 92182, USA.
Cristiane C ThompsonBiology Institute, Federal University of Rio de Janeiro (UFRJ), Rio de Janeiro, RJ, 21941-599, Brazil.
Matthew S EdwardsDepartment of Biology, San Diego State University, San Diego, CA, 92182, USA.
Elizabeth A DinsdaleDepartment of Biology, San Diego State University, San Diego, CA, 92182, USA.
Fabiano L ThompsonBiology Institute, Federal University of Rio de Janeiro (UFRJ), Rio de Janeiro, RJ, 21941-599, Brazil. fabianothompson1@gmail.com.
San Diego State University · USUniversidade Federal do Rio de Janeiro · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLife in the ocean will increasingly have to contend with a complex matrix of concurrent shifts in environmental properties that impact their physiology and control their life histories. Rhodoliths are coralline red algae (Corallinales, Rhodophyta) that are photosynthesizers, calcifiers, and ecosystem engineers and therefore represent important targets for ocean acidification (OA) research. Here, we exposed live rhodoliths to near-future OA conditions to investigate responses in their photosynthetic capacity, calcium carbonate production, and associated microbiome using carbon uptake, decalcification assays, and whole genome shotgun sequencing metagenomic analysis, respectively. The results from our live rhodolith assays were compared to similar manipulations on dead rhodolith (calcareous skeleton) biofilms and water column microbial communities, thereby enabling the assessment of host-microbiome interaction under climate-driven environmental perturbations.

resultsUnder high pCO

conclusionsOur results suggest that a tightly regulated microbial-host interaction, as evidenced by the stability of the rhodolith microbiome recorded here under OA-like conditions, is important for host resilience to environmental stress. This study extends the scarce comprehension of microbes associated with rhodolith beds and their reaction to increased pCO

Indexed as

MicrobiotaBiodiversityHydrogen-Ion ConcentrationMetagenomeOceans and SeasPhotosynthesisRhodophytaSeawaterStress, PhysiologicalClimate changeCoralline crustose algaeHost-microbe interactionsMetagenomicsOcean acidificationRhodolith

Identifiers

PMID30249182
PMCPMC6154897
OpenAlexW2893081018

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.