Evidence map›Paper›PMID 30248370›Full record

ArticleMolecular and biochemical parasitology2018

TbUTP10, a protein involved in early stages of pre-18S rRNA processing in Trypanosoma brucei.

Drahomíra Faktorová, Anita Bär, Hassan Hashimi, Katherine McKenney, Aleš Horák, Achim Schnaufer, Mary Anne T Rubio, Juan D Alfonzo, Julius Lukeš

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In one paragraph

Article in Molecular and biochemical parasitology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Drahomíra FaktorováInstitute of Parasitology, Biology Centre, Czech Academy of Sciences, 37005, České Budějovice (Budweis), Czech Republic; Faculty of Sciences, University of South Bohemia, 37005, České Budějovice, Czech Republic. Electronic address: dranov@paru.cas.cz.
Anita BärFaculty of Sciences, University of South Bohemia, 37005, České Budějovice, Czech Republic.
Hassan HashimiInstitute of Parasitology, Biology Centre, Czech Academy of Sciences, 37005, České Budějovice (Budweis), Czech Republic; Faculty of Sciences, University of South Bohemia, 37005, České Budějovice, Czech Republic.
Katherine McKenneyDepartment of Microbiology, The Ohio State University, Columbus, OH, USA; The Center for RNA Biology, The Ohio State University, Columbus, OH, USA.
Aleš HorákInstitute of Parasitology, Biology Centre, Czech Academy of Sciences, 37005, České Budějovice (Budweis), Czech Republic; Faculty of Sciences, University of South Bohemia, 37005, České Budějovice, Czech Republic.
Achim SchnauferCentre of Immunity, Infection and Evolution and Institute of Immunology & Infection Research, University of Edinburgh, Edinburgh, United Kingdom.
Mary Anne T RubioDepartment of Microbiology, The Ohio State University, Columbus, OH, USA; The Center for RNA Biology, The Ohio State University, Columbus, OH, USA.
Juan D AlfonzoDepartment of Microbiology, The Ohio State University, Columbus, OH, USA; The Center for RNA Biology, The Ohio State University, Columbus, OH, USA; The Ohio State Biochemistry Program, The Ohio State University, Columbus, OH, USA.
Julius LukešInstitute of Parasitology, Biology Centre, Czech Academy of Sciences, 37005, České Budějovice (Budweis), Czech Republic; Faculty of Sciences, University of South Bohemia, 37005, České Budějovice, Czech Republic.
Sewanee: The University of the South · USThe Ohio State University · USCentre for Immunity, Infection and Evolution · GBUniversity of South Bohemia in České Budějovice · CZ

Funding

tRNA editing by deamination: Balancing affinity and specifictyR01GM084065 · NIGMS · OHIO STATE UNIVERSITY · PI ALFONZO, JUAN D · 2008 to 2021
$4.0M
NIGMS NIH HHS R01 GM084065
6 · The paper itself

Abstract

Ribosome biosynthesis, best studied in opisthokonts, is a highly complex process involving numerous protein and RNA factors. Yet, very little is known about the early stages of pre-18S rRNA processing even in these model organisms, let alone the conservation of this mechanism in other eukaryotes. Here we extend our knowledge of this process by identifying and characterizing the essential protein TbUTP10, a homolog of yeast U3 small nucleolar RNA-associated protein 10 - UTP10 (HEATR1 in human), in the excavate parasitic protist Trypanosoma brucei. We show that TbUTP10 localizes to the nucleolus and that its ablation by RNAi knock-down in two different T. brucei life cycle stages results in similar phenotypes: a disruption of pre-18S rRNA processing, exemplified by the accumulation of rRNA precursors, a reduction of mature 18S rRNA, and also a decrease in the level of U3 snoRNA. Moreover, polysome profiles of the RNAi-induced knock-down cells show a complete disappearance of the 40S ribosomal subunit, and a prominent accumulation of the 60S large ribosomal subunit, reflecting impaired ribosome assembly. Thus, TbUTP10 is an important protein in the processing of 18S rRNA.

Indexed as

Genes, EssentialRNA Processing, Post-TranscriptionalGene SilencingProtozoan ProteinsRNA-Binding ProteinsRNA, Ribosomal, 18SRNA, Small NucleolarTrypanosoma brucei bruceiProtozoan ProteinsRNA-Binding ProteinsRNA, Ribosomal, 18SRNA, Small NucleolarPre-18S rRNA processingRibosomal RNATrypanosomaU3 snoRNAUTP10

Identifiers

PMID30248370
PMCPMC6556232
OpenAlexW2891142702

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.