Evidence map›Paper›PMID 30248095›Full record

ArticlePLoS genetics2018

The genomic basis of environmental adaptation in house mice.

Megan Phifer-Rixey, Ke Bi, Kathleen G Ferris, Michael J Sheehan, Dana Lin, Katya L Mack, Sara M Keeble, Taichi A Suzuki, Jeffrey M Good, Michael W Nachman

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 93 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. bioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Phenotypic and developmental dissection of an instance of the island rule.Evolution; international journal of organic evolution · 2025
    Article
  12. Linking individual fitness to the evolution of cognition.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  13. Article
  14. Intraspecific gene regulation in cis- and trans.Evolution; international journal of organic evolution · 2025
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Molecular evolution of the mammalian kinetochore complex.bioRxiv : the preprint server for biology · 2024
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Megan Phifer-RixeyDepartment of Biology, Monmouth University, West Long Branch, New Jersey, United States of America.ORCID 0000-0002-3804-6229
Ke BiDepartment of Integrative Biology and Museum of Vertebrate Zoology, University of California, Berkeley, Berkeley, California, United States of America.
Kathleen G FerrisDepartment of Integrative Biology and Museum of Vertebrate Zoology, University of California, Berkeley, Berkeley, California, United States of America.
Michael J SheehanDepartment of Integrative Biology and Museum of Vertebrate Zoology, University of California, Berkeley, Berkeley, California, United States of America.
Dana LinDepartment of Integrative Biology and Museum of Vertebrate Zoology, University of California, Berkeley, Berkeley, California, United States of America.
Katya L MackDepartment of Integrative Biology and Museum of Vertebrate Zoology, University of California, Berkeley, Berkeley, California, United States of America.
Sara M KeebleDivision of Biological Sciences, University of Montana, Missoula, Missoula, Montana, United States of America.ORCID 0000-0002-7318-3122
Taichi A SuzukiDepartment of Integrative Biology and Museum of Vertebrate Zoology, University of California, Berkeley, Berkeley, California, United States of America.ORCID 0000-0001-7800-8596
Jeffrey M GoodDivision of Biological Sciences, University of Montana, Missoula, Missoula, Montana, United States of America.ORCID 0000-0003-0707-5374
Michael W NachmanDepartment of Integrative Biology and Museum of Vertebrate Zoology, University of California, Berkeley, Berkeley, California, United States of America.ORCID 0000-0003-4321-5135
Museum of Vertebrate Zoology · USQB3 · USUniversity of Montana · USUniversity of Southern California · US

Funding

Natural selection and DNA sequence variation in MusR01GM074245 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI NACHMAN, MICHAEL W. · 2005 to 2015
$3.0M
Evolutionary and Functional Genetics of Male Reproduction using Wild Mice as a MoR01GM098536 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI DEAN, MATTHEW D · 2012 to 2016
$1.5M
Meiotic sex chromosome inactivation and the developmental basis of hybrid male stR01HD073439 · NICHD · UNIVERSITY OF MONTANA · PI GOOD, JEFFREY · 2012 to 2016
$1.5M
Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencinS10OD010786 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COMAI, LUCA · 2012 to 2012
$311k
NICHD NIH HHS R01 HD073439NIGMS NIH HHS R01 GM074245NIGMS NIH HHS R01 GM098536NIH HHS S10 OD010786NIH HHS S10 OD018174
6 · The paper itself

Abstract

House mice (Mus musculus) arrived in the Americas only recently in association with European colonization (~400-600 generations), but have spread rapidly and show evidence of local adaptation. Here, we take advantage of this genetic model system to investigate the genomic basis of environmental adaptation in house mice. First, we documented clinal patterns of phenotypic variation in 50 wild-caught mice from a latitudinal transect in Eastern North America. Next, we found that progeny of mice from different latitudes, raised in a common laboratory environment, displayed differences in a number of complex traits related to fitness. Consistent with Bergmann's rule, mice from higher latitudes were larger and fatter than mice from lower latitudes. They also built bigger nests and differed in aspects of blood chemistry related to metabolism. Then, combining exomic, genomic, and transcriptomic data, we identified specific candidate genes underlying adaptive variation. In particular, we defined a short list of genes with cis-eQTL that were identified as candidates in exomic and genomic analyses, all of which have known ties to phenotypes that vary among the studied populations. Thus, wild mice and the newly developed strains represent a valuable resource for future study of the links between genetic variation, phenotypic variation, and climate.

Indexed as

Genetic VariationAdaptation, PhysiologicalAnimalsClimateFemaleMaleMiceMice, Inbred StrainsModels, GeneticPhenotypeQuantitative Trait Loci

Identifiers

PMID30248095
PMCPMC6171964
OpenAlexW2890666869

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.