Evidence map›Paper›PMID 30247636›Full record

ArticleHuman molecular genetics2019

Inherited thrombocytopenia associated with mutation of UDP-galactose-4-epimerase (GALE).

Aaron Seo, Suleyman Gulsuner, Sarah Pierce, Miri Ben-Harosh, Hanna Shalev, Tom Walsh, Tanya Krasnov, Orly Dgany, Sergei Doulatov, Hannah Tamary and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Pyroptosis regulation byFrontiers in immunology · 2024
    Review
  7. Article
  8. Inside-to-outside and back to the future of megakaryopoiesis.Research and practice in thrombosis and haemostasis · 2023
    Article
  9. Review
  10. Article
  11. Review
  12. Observational
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. Inherited Platelet Disorders: An Updated Overview.International journal of molecular sciences · 2021
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Aaron SeoDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Suleyman GulsunerDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Sarah PierceDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Miri Ben-HaroshDepartment of Pediatric Hematology/Oncology, Soroka Medical Center, Faculty of Medicine, Ben-Gurion University, Beer Sheva, Israel.
Hanna ShalevDepartment of Pediatric Hematology/Oncology, Soroka Medical Center, Faculty of Medicine, Ben-Gurion University, Beer Sheva, Israel.
Tom WalshDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Tanya KrasnovPediatric Hematology Laboratory, Felsenstein Medical Research Center, Petach Tikva, Israel.
Orly DganyPediatric Hematology Laboratory, Felsenstein Medical Research Center, Petach Tikva, Israel.
Sergei DoulatovDepartment of Medicine, Division of Hematology, University of Washington, Seattle, WA, USA.
Hannah TamaryPediatric Hematology Laboratory, Felsenstein Medical Research Center, Petach Tikva, Israel.
Akiko ShimamuraDepartment of Pediatric Hematology/Oncology, Boston Children's Hospital, Dana Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.
Mary-Claire KingDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
University of Washington · USRabin Medical Center · ILSoroka Medical Center · ILBoston Children's Hospital · USTel Aviv University · IL

Funding

University of Washington Medical Scientist Training Program: MD/PhDT32GM007266 · NIGMS · UNIVERSITY OF WASHINGTON · PI HORWITZ, MARSHALL S. · 1985 to 2023
$30.4M
Translational Studies of Inherited Marrow Failure and Myelodysplastic SyndromesR24DK099808 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ABKOWITZ, JANIS L, EBERT, BENJAMIN LEVINE · 2013 to 2017
$8.2M
GENOMIC ANALYSIS OF INHERITED BREAST AND OVARIAN CANCERR35CA197458 · NCI · UNIVERSITY OF WASHINGTON · PI KING, MARY-CLAIRE · 2015 to 2021
$6.4M
INTERDISCIPLINARY TRAINING IN DEVELOPMENTAL BIOLOGYT32HD007183 · NICHD · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2015
$5.7M
Identifying and Characterizing Novel Genes for Inherited Bone Marrow FailureF30DK103462 · NIDDK · UNIVERSITY OF WASHINGTON · PI SEO, AARON · 2016 to 2017
$88k
NCI NIH HHS R35 CA197458NICHD NIH HHS T32 HD007183NIDDK NIH HHS F30 DK103462NIDDK NIH HHS R24 DK099808NIGMS NIH HHS T32 GM007266
6 · The paper itself

Abstract

Severe thrombocytopenia, characterized by dysplastic megakaryocytes and intracranial bleeding, was diagnosed in six individuals from a consanguineous kindred. Three of the individuals were successfully treated by bone marrow transplant. Whole-exome sequencing and homozygosity mapping of multiple family members, coupled with whole-genome sequencing to reveal shared non-coding variants, revealed one potentially functional variant segregating with thrombocytopenia under a recessive model: GALE p.R51W (c.C151T, NM_001127621). The mutation is extremely rare (allele frequency = 2.5 × 10-05), and the likelihood of the observed co-segregation occurring by chance is 1.2 × 10-06. GALE encodes UDP-galactose-4-epimerase, an enzyme of galactose metabolism and glycosylation responsible for two reversible reactions: interconversion of UDP-galactose with UDP-glucose and interconversion of UDP-N-acetylgalactosamine with UDP-N-acetylglucosamine. The mutation alters an amino acid residue that is conserved from yeast to humans. The variant protein has both significantly lower enzymatic activity for both interconversion reactions and highly significant thermal instability. Proper glycosylation is critical to normal hematopoiesis, in particular to megakaryocyte and platelet development, as reflected in the presence of thrombocytopenia in the context of congenital disorders of glycosylation. Mutations in GALE have not previously been associated with thrombocytopenia. Our results suggest that GALE p.R51W is inadequate for normal glycosylation and thereby may impair megakaryocyte and platelet development. If other mutations in GALE are shown to have similar consequences, this gene may be proven to play a critical role in hematopoiesis.

Indexed as

AdultAllelesExome SequencingFemaleGalactoseGalactosemiasGene FrequencyHumansMaleMiddle AgedPedigreeThrombocytopeniaUDPglucose 4-EpimeraseGalactosegalactose epimeraseUDPglucose 4-Epimerase

Identifiers

PMID30247636
PMCPMC6298239
OpenAlexW2889561989

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.