ArticlePeerJ2018
Metabolic marker gene mining provides insight in global
Article in PeerJ, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
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Who cites it
21 citing papers in PubMed.
- Article
- Occurrence and temporal dynamics of denitrifying protist endosymbionts in the wastewater microbiome.ISME communications · 2025Article
- Microbial and chemical predictors of methane release from a stratified thermokarst permafrost hotspot.Frontiers in microbiology · 2025Article
- Essential nucleic acid omics: a theoretical foundation for early-stage users.Frontiers in bioinformatics · 2025Review
- Genetic potential for aerobic respiration and denitrification in globally distributed respiratory endosymbionts.Nature communications · 2024Article
- Extracellular vesicle formation inProceedings of the National Academy of Sciences of the United States of America · 2024Article
- Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions.Genome biology · 2024Article
- Phylogenetic diversity of functional genes in deep-sea cold seeps: a novel perspective on metagenomics.Microbiome · 2023Article
- Well-hidden methanogenesis in deep, organic-rich sediments of Guaymas Basin.The ISME journal · 2023Article
- Organic matter lability modifies the vertical structure of methane-related microbial communities in lake sediments.Microbiology spectrum · 2023Article
- Enrichment and characterization of a nitric oxide-reducing microbial community in a continuous bioreactor.Nature microbiology · 2023Article
- Genomic remnants of ancestral methanogenesis and hydrogenotrophy in Archaea drive anaerobic carbon cycling.Science advances · 2022Article
- PhyloFunDB: A Pipeline to Create and Update Functional Gene Taxonomic Databases.Microorganisms · 2022Article
- Reconstruction of Archaeal Genomes from Short-Read Metagenomes.Methods in molecular biology (Clifton, N.J.) · 2022Article
- Two Metagenome-Assembled Genomes of Hydrogen-DependentMicrobiology resource announcements · 2021Article
- Genomic Insights into Adaptations of Trimethylamine-Utilizing Methanogens to Diverse Habitats, Including the Human Gut.mSystems · 2021Article
- High-quality bacterial genomes of a partial-nitritation/anammox system by an iterative hybrid assembly method.Microbiome · 2020Article
- Unravelling the effects of tropical land use conversion on the soil microbiome.Environmental microbiome · 2020Article
- Impact of Microbiota Transplant on Resistome of Gut Microbiota in Gnotobiotic Piglets and Human Subjects.Frontiers in microbiology · 2020Article
- Uncovering the Diversity and Activity of Methylotrophic Methanogens in Freshwater Wetland Soils.mSystems · 2019Article
Corrections and comments
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Over the past years, metagenomics has revolutionized our view of microbial diversity. Moreover, extracting near-complete genomes from metagenomes has led to the discovery of known metabolic traits in unsuspected lineages. Genome-resolved metagenomics relies on assembly of the sequencing reads and subsequent binning of assembled contigs, which might be hampered by strain heterogeneity or low abundance of a target organism. Here we present a complementary approach, metagenome marker gene mining, and use it to assess the global diversity of archaeal methane metabolism through the
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.