Dynamic parallelism for synaptic updating in GPU-accelerated spiking neural network simulations.

Graphical processing units (GPUs) can significantly accelerate spiking neural network (SNN) simulations by exploiting parallelism for independent computations. Both the changes in membrane potential at each time-step, and checking for spiking threshold crossings for each neuron, can be calculated independently. However, because synaptic transmission requires communication between many different neurons, efficient parallel processing may be hindered, either by data transfers between GPU and CPU at each time-step or, alternatively, by running many parallel computations for neurons that do not elicit any spikes. This, in turn, would lower the effective throughput of the simulations. Traditionally, a central processing unit (CPU, host) administers the execution of parallel processes on the GPU (device), such as memory initialization on the device, data transfer between host and device, and starting and synchronizing parallel processes. The parallel computing platform CUDA 5.0 introduced dynamic parallelism, which allows the initiation of new parallel applications within an ongoing parallel kernel. Here, we apply dynamic parallelism for synaptic updating in SNN simulations on a GPU. Our algorithm eliminates the need to start many parallel applications at each time-step, and the associated lags of data transfer between CPU and GPU memories. We report a significant speed-up of SNN simulations, when compared to former accelerated parallelization strategies for SNNs on a GPU.