Evidence map›Paper›PMID 30245514›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2019

Splice-altering variant in COL11A1 as a cause of nonsyndromic hearing loss DFNA37.

Kevin T Booth, James W Askew, Zohreh Talebizadeh, Patrick L M Huygen, James Eudy, Judith Kenyon, Denise Hoover, Michael S Hildebrand, Katherine R Smith, Melanie Bahlo and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 54 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. [The cochlear extracellular matrix gene mutations and hearing loss].Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery · 2025
    Review
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  13. A recurrent variant inOphthalmic genetics · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 8 institutions in 3 countries.

Kevin T BoothMolecular Otolaryngology and Renal Research Laboratories, Department of Otolaryngology, University of Iowa, Iowa City, IA, USA.
James W AskewDevelopmental Neuroscience, Munroe Meyer Institute, University of Nebraska Medical Center, Omaha, NE, USA.
Zohreh TalebizadehChildren's Mercy Hospital and University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA.
Patrick L M HuygenDepartment of Otorhinolaryngology, Radboud University Nijmegen Medical Centre, Nijmegen, Netherlands.
James EudyDNA Microarray and Sequencing Core, University of Nebraska Medical Center, Omaha, NE, USA.
Judith KenyonMolecular Otolaryngology and Renal Research Laboratories, Department of Otolaryngology, University of Iowa, Iowa City, IA, USA.
Denise HooverDevelopmental Neuroscience, Munroe Meyer Institute, University of Nebraska Medical Center, Omaha, NE, USA.
Michael S HildebrandEpilepsy Research Centre, Department of Medicine, University of Melbourne, Austin Health, Heidelberg, VIC, Australia.
Katherine R SmithThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Melanie BahloThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
William J KimberlingMolecular Otolaryngology and Renal Research Laboratories, Department of Otolaryngology, University of Iowa, Iowa City, IA, USA.
Richard J H SmithMolecular Otolaryngology and Renal Research Laboratories, Department of Otolaryngology, University of Iowa, Iowa City, IA, USA.
Hela AzaiezMolecular Otolaryngology and Renal Research Laboratories, Department of Otolaryngology, University of Iowa, Iowa City, IA, USA. hela-azaiez@uiowa.edu.
Shelley D SmithDevelopmental Neuroscience, Munroe Meyer Institute, University of Nebraska Medical Center, Omaha, NE, USA. shelley.smith@unmc.edu.
University of Iowa · USUniversity of Nebraska Medical Center · USAustin Health · AUChildren's Mercy Hospital · USNebraska Medical Center · USRadboud University Nijmegen · NLUniversity of Melbourne · AUWalter and Eliza Hall Institute of Medical Research · AU

Funding

NONSYNDROMIC HEARING LOSS--A COLLABORATIVE STUDYR01DC002842 · NIDCD · UNIVERSITY OF IOWA · PI SMITH, RICHARD J.H. · 1996 to 2024
$12.7M
Optimizing Genetic Testing for Deafness for Clinical DiagnosticsR01DC012049 · NIDCD · UNIVERSITY OF IOWA · PI TERRY A BRAUN, Thomas L. Casavant · 2011 to 2026
$8.7M
AUTOSOMAL DOMINANT NONSYNDROMIC HEARING LOSSR01DC003544 · NIDCD · UNIVERSITY OF IOWA · PI SMITH, RICHARD J.H. · 1998 to 2017
$7.8M
UNMC Histology/Imaging and Creighton University Imaging Core FacilityP30GM110768 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI SMITH, SHELLEY D · 2014 to 2018
$5.1M
NIDCD NIH HHS R01 DC002842NIDCD NIH HHS R01 DC003544NIDCD NIH HHS R01 DC012049NIGMS NIH HHS P30 GM110768
6 · The paper itself

Abstract

purposeThe aim of this study was to determine the genetic cause of autosomal dominant nonsyndromic hearing loss segregating in a multigenerational family.

methodsClinical examination, genome-wide linkage analysis, and exome sequencing were carried out on the family.

resultsAffected individuals presented with early-onset progressive mild hearing impairment with a fairly flat, gently downsloping or U-shaped audiogram configuration. Detailed clinical examination excluded any additional symptoms. Linkage analysis detected an interval on chromosome 1p21 with a logarithm of the odds (LOD) score of 8.29: designated locus DFNA37. Exome sequencing identified a novel canonical acceptor splice-site variant c.652-2A>C in the COL11A1 gene within the DFNA37 locus. Genotyping of all 48 family members confirmed segregation of this variant with the deafness phenotype in the extended family. The c.652-2A>C variant is novel, highly conserved, and confirmed in vitro to alter RNA splicing.

conclusionWe have identified COL11A1 as the gene responsible for deafness at the DFNA37 locus. Previously, COL11A1 was solely associated with Marshall and Stickler syndromes. This study expands its phenotypic spectrum to include nonsyndromic deafness. The implications of this discovery are valuable in the clinical diagnosis, prognosis, and treatment of patients with COL11A1 pathogenic variants.

Indexed as

Genetic LinkageAdolescentAdultChildChild, PreschoolCollagen Type XIDeafnessExomeExome SequencingFemaleGenotypeHumansInfantInfant, NewbornMalePedigreeCOL11A1 protein, humanCollagen Type XIProtein IsoformsCOL11A1DFNA37exome sequencingnonsyndromic hearing losssplice-site variant

Identifiers

PMID30245514
PMCPMC6431578
OpenAlexW2891160446

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.