Evidence map›Paper›PMID 30242932›Full record

ArticleProtein science : a publication of the Protein Society2018

On the damage done to the structure of the Thermoplasma acidophilum proteasome by electron radiation.

Jimin Wang, Zheng Liu, Robert H Crabtree, Joachim Frank, Peter B Moore

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jimin WangDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, 06520.ORCID 0000-0002-4504-8038
Zheng LiuDepartment of Biochemistry and Molecular Biophysics.
Robert H CrabtreeDepartment of Chemistry, Yale University, New Haven, CT06520.
Joachim FrankDepartment of Biochemistry and Molecular Biophysics.
Peter B MooreDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, 06520.

Funding

X-RAY ANALYSIS OF PROTEIN STRUCTURE AND FUNCTIONP01GM022778 · NIGMS · YALE UNIVERSITY · PI BREAKER, RONALD R · 1985 to 2019
$26.1M
STRUCTURE ANALYSIS OF MACROMOLECULAR ASSEMBLIESR01GM029169 · NIGMS · WADSWORTH CENTER · PI FRANK, JOACHIM · 1985 to 2019
$6.1M
Time-resolved Cryo-EM of Short-lived States in Eukaryotic TranslationR01GM055440 · NIGMS · WADSWORTH CENTER · PI FRANK, JOACHIM · 1997 to 2020
$5.1M
NIGMS NIH HHS P01 GM022778NIGMS NIH HHS R01 GM029169NIGMS NIH HHS R01 GM055440
6 · The paper itself

Abstract

It has long been known that proteins are damaged when they are exposed to the electron beam in an electron microscope. Here we show that exposure to electrons under cryo-EM conditions leads to a small change in the quaternary structure of the Thermoplasma acidophilum proteasome, and that backbones atoms belonging to the α-helices in this molecule appear to be particular prone to chemical damage. A chemical mechanism is proposed for this damage. Both this local chemical effect and the more global quaternary structure effect appear to heterogenize samples leading to a radiation dose-dependent degradation of the resolution of the EM maps obtained from this molecule.

Indexed as

ElectronsModels, MolecularProteasome Endopeptidase ComplexProtein ConformationThermoplasmaProteasome Endopeptidase Complexcryo-electron microscopydifference Fourier methodelectron radiation-induced damageproteasome

Identifiers

PMID30242932
PMCPMC6237698

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.