Evidence map›Paper›PMID 30242931›Full record

ArticleProtein science : a publication of the Protein Society2018

Biophysical insights into a highly selective l-arginine-binding lipoprotein of a pathogenic treponeme.

Ranjit K Deka, Wei Z Liu, Shih-Chia Tso, Michael V Norgard, Chad A Brautigam

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 91% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Ranjit K DekaDepartments of Microbiology, 5323 Harry Hines Blvd., Dallas, Texas, 75390.
Wei Z LiuDepartments of Microbiology, 5323 Harry Hines Blvd., Dallas, Texas, 75390.
Shih-Chia TsoDepartments of Biophysics, UT Southwestern Medical Center, 5323 Harry Hines Blvd., Dallas, Texas, 75390.
Michael V NorgardDepartments of Microbiology, 5323 Harry Hines Blvd., Dallas, Texas, 75390.
Chad A BrautigamDepartments of Microbiology, 5323 Harry Hines Blvd., Dallas, Texas, 75390.
University of Texas Health Science Center at Dallas · USSouthwestern Medical CenterThe University of Texas Southwestern Medical Center · US

Funding

The flavin-centric metabolic lifestyle of Treponema pallidumR01AI056305 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI HENDRIXSON, DAVID R · 2003 to 2024
$9.6M
NIAID NIH HHS R01 AI056305
6 · The paper itself

Abstract

Biophysical and biochemical studies on the lipoproteins and other periplasmic proteins from the spirochetal species Treponema pallidum have yielded numerous insights into the functioning of the organism's peculiar membrane organization, its nutritional requirements, and intermediary metabolism. However, not all T. pallidum proteins have proven to be amenable to biophysical studies. One such recalcitrant protein is Tp0309, a putative polar-amino-acid-binding protein of an ABC transporter system. To gain further information on its possible function, a homolog of the protein from the related species T. vincentii was used as a surrogate. This protein, Tv2483, was crystallized, resulting in the determination of its crystal structure at a resolution of 1.75 Å. The protein has a typical fold for a ligand-binding protein, and a single molecule of l-arginine was bound between its two lobes. Differential scanning fluorimetry and isothermal titration calorimetry experiments confirmed that l-arginine bound to the protein with unusually high selectivity. However, further comparison to Tp0309 showed differences in key amino-acid-binding residues may impart an alternate specificity for the T. pallidum protein.

Indexed as

Amino Acid SequenceArginineBinding SitesCalorimetryLigandsLipoproteinsModels, MolecularSequence AlignmentTreponema pallidumArginineLigandsLipoproteinsABC transporterdifferential scanning fluorimetryisothermal titration calorimetryl-arginineligand-binding proteinpolar amino acidsTreponemaX-ray crystallography

Identifiers

PMID30242931
PMCPMC6237705
OpenAlexW2893143885

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.