Evidence map›Paper›PMID 30242740›Full record

ArticleGenes & genomics2019

Complete mitochondrial genome of a kind of snakehead fish Channa siamensis and its phylogenetic consideration.

Rui Li, Gang Wang, Zheng-Yong Wen, Yuan-Chao Zou, Chuan-Jie Qin, Yu Luo, Jun Wang, Gui-Hong Chen

Abstract read
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In one paragraph

Article in Genes & genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 25 citations in OpenAlex.

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  9. Complete mitochondrial genome of broadbanded cardinalfish (Mitochondrial DNA. Part B, Resources · 2020
    Article
  10. Article
  11. Complete mitochondrial genome of the snakehead (Mitochondrial DNA. Part B, Resources · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Rui LiConservation and Utilization of Fishes Resources in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Life Sciences, Neijiang Normal University, Neijiang, 641100, Sichuan, China.
Gang WangConservation and Utilization of Fishes Resources in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Life Sciences, Neijiang Normal University, Neijiang, 641100, Sichuan, China.
Zheng-Yong WenConservation and Utilization of Fishes Resources in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Life Sciences, Neijiang Normal University, Neijiang, 641100, Sichuan, China. zhengyong_wen@126.com.
Yuan-Chao ZouConservation and Utilization of Fishes Resources in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Life Sciences, Neijiang Normal University, Neijiang, 641100, Sichuan, China.
Chuan-Jie QinConservation and Utilization of Fishes Resources in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Life Sciences, Neijiang Normal University, Neijiang, 641100, Sichuan, China.
Yu LuoInstitute of Aquaculture, Neijiang Academy of Agricultural Sciences, Neijiang, 641000, Sichuan, China.
Jun WangConservation and Utilization of Fishes Resources in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Life Sciences, Neijiang Normal University, Neijiang, 641100, Sichuan, China.
Gui-Hong ChenConservation and Utilization of Fishes Resources in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Life Sciences, Neijiang Normal University, Neijiang, 641100, Sichuan, China.
Neijiang Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The snakehead fish, Channa siamensis, belongs to the genus of Channa (perciformes: Channidae) and was first reported by Günther in 1861. Despite it has been described approximately for 15 decades, the genetic information is limited and the taxon status of this kind of fish is still unclear. The primary objective of this study is to get more genomic data and calculate the taxon location of this kind of fish. The next generation sequencing method was used to obtain the whole mitochondrial DNA information, and bioinformatic analysis was performed to investigate the evolutionary status and taxon location of C. siamensis. The circular mitochondrial DNA was 16,570 bp in length, and which showed typical piscine structure and arrangement. The overall nucleotide composition was 29.28% A, 24.72% T, 30.71% C, 15.29% G, with 54.1% AT, respectively. Phylogenetic analyses using concatenated amino acid and nucleotide sequences of the 13 protein-coding genes with two different methods (Maximum likelihood and Bayesian analysis) both highly supported C. siamensis belongs to the genus Channa and shows a close relationship with C. micropeltes. These data will provide more useful information for a better understanding of the mitochondrial genomic diversities and evolution in fish as well as novel genetic markers for studying population genetics and species identification.

Indexed as

Genome, MitochondrialPhylogenyAnimalsFish ProteinsMolecular Sequence AnnotationPerciformesFish ProteinsChanna siamensisGenes arrangementMitochondrial genomePhylogenetic analysis

Identifiers

PMID30242740
OpenAlexW2890711398

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.