Evidence map›Paper›PMID 30242659›Full record

ArticleEnvironmental science and pollution research international2018

Comparative transcriptome analysis of Zea mays in response to petroleum hydrocarbon stress.

Birsen Cevher-Keskin, Çiğdem Selçukcan-Erol, Bayram Yüksel, Özlem Ertekin, Yasemin Yıldızhan, Selma Onarıcı, Oktay Kulen, Abdul Razaque Memon

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Article in Environmental science and pollution research international, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Physiological and Biochemical Responses ofInternational journal of molecular sciences · 2023
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Birsen Cevher-KeskinMarmara Research Center, Genetic Engineering and Biotechnology Institute, Plant Molecular Biology & Genetics Laboratory, The Scientific and Technological Research Council of Turkey (TUBITAK) , P O Box, 21, 41470, Gebze, Kocaeli, Turkey. bcevherkeskin@gmail.com.
Çiğdem Selçukcan-ErolFaculty of Science, Department of Informatics, Istanbul University, Beyazıt/Fatih, Istanbul, Turkey.
Bayram YükselMarmara Research Center, Genetic Engineering and Biotechnology Institute, Plant Molecular Biology & Genetics Laboratory, The Scientific and Technological Research Council of Turkey (TUBITAK) , P O Box, 21, 41470, Gebze, Kocaeli, Turkey.
Özlem ErtekinMarmara Research Center, Genetic Engineering and Biotechnology Institute, Plant Molecular Biology & Genetics Laboratory, The Scientific and Technological Research Council of Turkey (TUBITAK) , P O Box, 21, 41470, Gebze, Kocaeli, Turkey.
Yasemin YıldızhanMarmara Research Center, Genetic Engineering and Biotechnology Institute, Plant Molecular Biology & Genetics Laboratory, The Scientific and Technological Research Council of Turkey (TUBITAK) , P O Box, 21, 41470, Gebze, Kocaeli, Turkey.
Selma OnarıcıMarmara Research Center, Genetic Engineering and Biotechnology Institute, Plant Molecular Biology & Genetics Laboratory, The Scientific and Technological Research Council of Turkey (TUBITAK) , P O Box, 21, 41470, Gebze, Kocaeli, Turkey.
Oktay KulenMarmara Research Center, Genetic Engineering and Biotechnology Institute, Plant Molecular Biology & Genetics Laboratory, The Scientific and Technological Research Council of Turkey (TUBITAK) , P O Box, 21, 41470, Gebze, Kocaeli, Turkey.
Abdul Razaque MemonFaculty of Science and Arts, Department of Molecular Biology and Genetics, Uşak University, Bir Eylul Kampus, 64200, Uşak, Turkey.

Funding

TUBITAK TARAL 1007 105G079
6 · The paper itself

Abstract

The use of plants for the improvement of soils contaminated with hydrocarbons has been a primary research focus in phytoremediation studies. Obtaining insights regarding genes that are differentially induced by petroleum hydrocarbon stress and understanding plant response mechanisms against petroleum hydrocarbons at molecular level is essential for developing better phytoremediation strategies to remove these hazardous contaminants. The purpose of this study was to analyze the transcriptomal profile changes under hydrocarbon stress in maize plants and identify the genes associated with the phytoremediative capacity. Zea mays GeneChips were used to analyze the global transcriptome profiles of maize treated with different concentrations of petroleum hydrocarbons. In total, 883, 1281, and 2162 genes were differentially induced or suppressed in the comparisons of 0 (control) vs. 1% crude petroleum, 1 vs. 5% crude petroleum, and 0 vs. 5% crude petroleum, respectively. The differentially expressed genes were functionally associated with the osmotic stress response mechanism, likely preventing the uptake of water from the roots, and the phytoremediative capacity of plants, e.g., secretory pathway genes. The results presented here show the regulatory mechanisms in the response to petroleum hydrocarbon pollution in soil. Our study provides global gene expression data of Z. mays in response to petroleum hydrocarbon stress that could be useful for further studies investigating the biodegradation mechanism in maize and other plants.

Indexed as

Biodegradation, EnvironmentalGene Expression ProfilingHydrocarbonsPetroleumPetroleum PollutionPlant RootsSoilSoil PollutantsTranscriptomeZea maysHydrocarbonsPetroleumSoilSoil PollutantsMicroarrayPetroleum hydrocarbonPhytoremediationTranscriptomeZea mays

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.