Evidence map›Paper›PMID 30242535›Full record

ArticleGenetica2019

Genome-wide analysis of the MYB-CC gene family of maize.

Jianrong Bai, Fengjie Sun, Minglei Wang, Liang Su, Rui Li, Gustavo Caetano-Anollés

Erratum issuedAbstract read
PubMed Publisher
In one paragraph

Article in Genetica, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Genome-Wide Identification of theInternational journal of molecular sciences · 2025
    Article
  3. Article
  4. Horticulture research · 2024
    Article
  5. Article
  6. Overexpression ofInternational journal of molecular sciences · 2022
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Jianrong BaiInstitute of Crop Sciences, Shanxi Academy of Agricultural Sciences, Taiyuan, 030031, Shanxi, China.
Fengjie SunSchool of Science and Technology, Georgia Gwinnett College, Lawrenceville, GA, 30043, USA.
Minglei WangDepartment of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Liang SuInstitute of Crop Sciences, Shanxi Academy of Agricultural Sciences, Taiyuan, 030031, Shanxi, China.
Rui LiInstitute of Crop Sciences, Shanxi Academy of Agricultural Sciences, Taiyuan, 030031, Shanxi, China.
Gustavo Caetano-AnollésDepartment of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. gca@illinois.edu.ORCID http://orcid.org/0000-0001-5854-4121
Institute of Crop Sciences · CNUniversity of Illinois Urbana-Champaign · USGwinnett College · US

Funding

Chinese Ministry of Agriculture 2009ZX08003 and 2011ZX08003National Centre for Supercomputing Applications Blue Waters allocationNational Institute of Food and Agriculture Hatch project 1014249Shanxi International Cooperation Project 2012081005
6 · The paper itself

Abstract

The MYB-CC gene family encode proteins that harbor a combination of characteristic myeloblastosis (MYB) and coiled-coil (CC) domain structures. Some MYB-CC genes have been demonstrated to represent transcription factors regulating phosphate uptake and controlling the starvation response in plants. Despite their physiological importance, a systematic analysis of MYB-CC genes has not been reported in maize. In our study, we identified and characterized maize MYB-CC genes at whole-genome level. A total of 12 maize MYB-CC genes (ZmMYB-CC1 to ZmMYB-CC12) were identified located in six out of the 10 chromosomes of maize. Their gene structures showed similar splicing patterns and large variations of intron length. Multiple sequence alignments revealed that all MYB-CC proteins in maize shared conserved sequence cores corresponding to the MYB and CC domains, respectively. The family expanded in maize partly due to tandem and segmental duplication events. Phylogenetic analysis of MYB-CC genes indicated that the MYB-CC gene family can be divided into two subfamilies and that gene members with same functions were found in the same groups. Results provide a very useful reference for cloning and functional analysis of PHR-like genes in maize and suggest a method to predict and select appropriate candidate genes for functional genomic analysis of useful traits in crop plants.

Indexed as

Genome, PlantMultigene FamilyConserved SequencePlant ProteinsProtein DomainsTranscription FactorsZea maysPlant ProteinsTranscription FactorsMaizeMYB–CC familyPHR-like genesPhylogenetic analysisStructural domains

Identifiers

PMID30242535
OpenAlexW2890059772

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.