Evidence map›Paper›PMID 30241501›Full record

ArticleBMC genomics2018

A genome-wide association study for natural antibodies measured in blood of Canadian Holstein cows.

Britt de Klerk, Mehdi Emam, Kathleen A Thompson-Crispi, Mehdi Sargolzaei, Johan J van der Poel, Bonnie A Mallard

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Britt de KlerkAnimal Breeding and Genomics Centre, Wageningen University, P.O. Box 338, Wageningen, The Netherlands.
Mehdi EmamCentre for Genetic Improvement of Livestock, University of Guelph, Guelph, ON, Canada.
Kathleen A Thompson-CrispiTrouw Nutrition Canada Inc., 150 Research Lane, Suite 200, Guelph, ON, N1G 4T2, Canada.
Mehdi SargolzaeiCentre for Genetic Improvement of Livestock, University of Guelph, Guelph, ON, Canada.
Johan J van der PoelAnimal Breeding and Genomics Centre, Wageningen University, P.O. Box 338, Wageningen, The Netherlands.
Bonnie A MallardCentre for Genetic Improvement of Livestock, University of Guelph, Guelph, ON, Canada. bmallard@ovc.uoguelph.ca.
University of Guelph · CAWageningen University & Research · NLDigital Research Alliance of Canada

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNatural antibodies (NAb) are an important component of the innate immune system, and fight infections as a part of the first line defence. NAb are poly-reactive and can respond non-specifically to antigens. Therefore, NAb may be a key trait when evaluating an animal's potential natural disease resistance. Variation in NAb is caused by both genetic and environmental factors. In this study genetic parameters of NAb were estimated and a genome-wide association study (GWAS) was performed to gain further understanding on the genes that are responsible for the observed genetic variation of NAb in Canadian Holsteins.

resultsIn total, blood samples of 1327 cows from 64 farms were studied. NAb binding to keyhole limpet hemocyanin (KLH) were determined via indirect ELISA. Immunoglobulin (Ig) isotypes, IgG and IgM, were evaluated. From the sample population, 925 cows were genotyped for 45,187 markers and each individual marker was tested to detect genetic variation in NAb levels. The relationships among animals was accounted for with genomic relationship. Results show heritabilities of 0.27 ± 0.064 (IgG) and 0.31 ± 0.065 (IgM). In total, 23 SNPs were found to be associated with IgG, but no SNPs were associated with IgM (FDR p-value < 0.05). The significant SNPs were located on autosomal chromosomes 1, 20 and 21 of the cow genome. Functional annotation analysis of the positional candidate genes revealed two sets of genes with biologically relevant functions related to NAb. In one set, seven genes with crucial roles in the production of antibody in B cells were associated with the trafficking of vesicles inside the cells between organelles. In the second set, two genes among positional candidate genes were associated with isotype class-switching and somatic hypermutation of B cells.

conclusionsThis study demonstrated the possibility of increasing NAb through selective breeding. In addition, the effects of two candidate pathways are proposed for further investigation of NAb production in Holsteins.

Indexed as

Polymorphism, Single NucleotideAnimalsAntibodiesCanadaCattleFemaleGenome-Wide Association StudyGenotypeImmunoglobulin GImmunoglobulin MMaleAntibodiesImmunoglobulin GImmunoglobulin MDairy cattleGenome-wide-association studyImmune systemImmunoglobulin class switchingNatural antibodyVesicle trafficking

Identifiers

PMID30241501
PMCPMC6150957
OpenAlexW2892029779

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.