Evidence map›Paper›PMID 30241415›Full record

ArticleInternational journal of molecular sciences2018

Whole Exome Sequencing Identifies a Novel Hedgehog-Interacting Protein G516R Mutation in Locally Advanced Papillary Thyroid Cancer.

Woo Kyung Lee, Seul Gi Lee, Seung Hyuk Yim, Daham Kim, Hyunji Kim, Seonhyang Jeong, Sang Geun Jung, Young Suk Jo, Jandee Lee

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Cell and Molecular Biology of Thyroid Disorders.International journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Woo Kyung LeeDepartment of Internal Medicine, Yonsei Cancer Center, Severance Hospital, Yonsei University College of Medicine, Seoul 120-752, Korea. lewoky7@yuhs.ac.
Seul Gi LeeBrain Korea 21 PLUS Project for Medical Science, Yonsei University, Seoul 120-752, Korea. seulgi@yuhs.ac.
Seung Hyuk YimDepartment of Surgery, Yonsei Cancer Center, Severance Hospital, Yonsei University College of Medicine, Seoul 120-752, Korea. ljd0906@gmail.com.
Daham KimDepartment of Internal Medicine, Yonsei Cancer Center, Severance Hospital, Yonsei University College of Medicine, Seoul 120-752, Korea. ljd0906@naver.com.
Hyunji KimDepartment of Surgery, Yonsei Cancer Center, Severance Hospital, Yonsei University College of Medicine, Seoul 120-752, Korea. hjkim0612@yuhs.ac.
Seonhyang JeongDepartment of Internal Medicine, Yonsei Cancer Center, Severance Hospital, Yonsei University College of Medicine, Seoul 120-752, Korea. bambi_89@yuhs.ac.
Sang Geun JungDepartment of Gynecological Oncology, Bundang CHA Medical Center, CHA University, Seongnam, Gyeonggi-do 13496, Korea. jandee@yonsei.ac.kr.
Young Suk JoDepartment of Internal Medicine, Yonsei Cancer Center, Severance Hospital, Yonsei University College of Medicine, Seoul 120-752, Korea. joys@yuhs.ac.
Jandee LeeDepartment of Surgery, Yonsei Cancer Center, Severance Hospital, Yonsei University College of Medicine, Seoul 120-752, Korea. jandee@yuhs.ac.
Yonsei University · KRCHA University Bundang Medical Center · KR

Funding

Korea Health Industry Development Institute HI15C2334National Research Foundation of Korea NRF-2017R1D1A1A09000916
6 · The paper itself

Abstract

Locally advanced thyroid cancer exhibits aggressive clinical features requiring extensive neck dissection. Therefore, it is important to identify changes in the tumor biology before local progression. Here, whole exome sequencing (WES) using tissues from locally advanced papillary thyroid cancer (PTC) presented a large number of single nucleotide variants (SNVs) in the metastatic lymph node (MLN), but not in normal tissues and primary tumors. Among those MLN-specific SNVs, a novel HHIP G516R (G1546A) mutation was also observed. Interestingly, in-depth analysis for exome sequencing data from the primary tumor presented altered nucleotide 'A' at a very low frequency indicating intra-tumor heterogeneity between the primary tumor and MLN. Computational prediction models such as PROVEAN and Polyphen suggested that HHIP G516R might affect protein function and stability. In vitro, HHIP G516R increased cell proliferation and promoted cell migration in thyroid cancer cells. HHIP G516R, a missense mutation, could be a representative example for the intra-tumor heterogeneity of locally advanced thyroid cancer, which can be a potential future therapeutic target for this disease.

Indexed as

ExomeExome SequencingMutation, MissenseCarcinoma, PapillaryCarrier ProteinsCell MovementCell ProliferationHigh-Throughput Nucleotide SequencingHumansLymphatic MetastasisMembrane GlycoproteinsThyroid NeoplasmsTumor Cells, CulturedCarrier ProteinsHHIP protein, humanMembrane Glycoproteinshedgehog proteinsneoplasm invasivenessthyroid cancer

Identifiers

PMID30241415
PMCPMC6213497
OpenAlexW2891721654

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.